miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11504 5' -59.9 NC_003085.1 + 27241 0.66 0.3954
Target:  5'- cUGcGUCUcAGCCUGgaugcgcagcagguCGCCCugCACCu -3'
miRNA:   3'- aACuCAGGuUCGGGC--------------GCGGGugGUGG- -5'
11504 5' -59.9 NC_003085.1 + 31324 0.67 0.383828
Target:  5'- -cGGGUCCGucaccuuGUCCGCGCggacguaccgguaggCCGCCAUg -3'
miRNA:   3'- aaCUCAGGUu------CGGGCGCG---------------GGUGGUGg -5'
11504 5' -59.9 NC_003085.1 + 651 0.67 0.380313
Target:  5'- -cGAGgcgCuCGAGCaCCGCccggacgucGCCgGCCACCu -3'
miRNA:   3'- aaCUCa--G-GUUCG-GGCG---------CGGgUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 32840 0.67 0.380313
Target:  5'- -gGGGcCCGagaGGCCgCGCGCCgCgggACCGCCc -3'
miRNA:   3'- aaCUCaGGU---UCGG-GCGCGG-G---UGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 15191 0.67 0.380313
Target:  5'- cUGAG-CCGGugcGCCaGCGCCgCGCCGCg -3'
miRNA:   3'- aACUCaGGUU---CGGgCGCGG-GUGGUGg -5'
11504 5' -59.9 NC_003085.1 + 11454 0.67 0.380313
Target:  5'- gUUGGGgCCGAcGCggugugaGCGuCCCACCACCg -3'
miRNA:   3'- -AACUCaGGUU-CGgg-----CGC-GGGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 49165 0.67 0.371619
Target:  5'- aUGAgGUCgGAGgCCGCccgguCCUGCCGCCg -3'
miRNA:   3'- aACU-CAGgUUCgGGCGc----GGGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 722 0.67 0.371619
Target:  5'- --aGGUCCA--CCCGCGCCuCAgUCGCCu -3'
miRNA:   3'- aacUCAGGUucGGGCGCGG-GU-GGUGG- -5'
11504 5' -59.9 NC_003085.1 + 48894 0.67 0.363063
Target:  5'- -gGAG-CauuGCCCGCcaGCCgCGCCGCCu -3'
miRNA:   3'- aaCUCaGguuCGGGCG--CGG-GUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 10088 0.67 0.363063
Target:  5'- aUGAGcCCccGCCgGCGUCggaACCGCCg -3'
miRNA:   3'- aACUCaGGuuCGGgCGCGGg--UGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 46719 0.67 0.362214
Target:  5'- -gGAGUCCuugGGCagcgccuUCGCGCgCGCUGCCa -3'
miRNA:   3'- aaCUCAGGu--UCG-------GGCGCGgGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 19216 0.67 0.354643
Target:  5'- -cGGGggCUggGCgCCGCGCaaggCCugCGCCa -3'
miRNA:   3'- aaCUCa-GGuuCG-GGCGCG----GGugGUGG- -5'
11504 5' -59.9 NC_003085.1 + 32754 0.67 0.354643
Target:  5'- cUUGAaacccGUCgCAAGCCCcaaGCCC-CCGCCc -3'
miRNA:   3'- -AACU-----CAG-GUUCGGGcg-CGGGuGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 11252 0.67 0.354643
Target:  5'- -aGAGUgcaCGAGCcaCCGcCGCCCgaguuGCCGCCa -3'
miRNA:   3'- aaCUCAg--GUUCG--GGC-GCGGG-----UGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 927 0.67 0.353809
Target:  5'- -cGAGUCCugGAGCgucggCCGCGUCCgggugccagacagGCCGCUg -3'
miRNA:   3'- aaCUCAGG--UUCG-----GGCGCGGG-------------UGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 17273 0.67 0.346363
Target:  5'- -cGcGUUgAAGCaCGCGCgCCACCACUg -3'
miRNA:   3'- aaCuCAGgUUCGgGCGCG-GGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 34537 0.67 0.338221
Target:  5'- -cGAGUUgGAGCgccaCGCGCUgGCgGCCg -3'
miRNA:   3'- aaCUCAGgUUCGg---GCGCGGgUGgUGG- -5'
11504 5' -59.9 NC_003085.1 + 24908 0.68 0.33022
Target:  5'- aUGAGgUCAGGCauguCCGCGCCgcgCACgCACCg -3'
miRNA:   3'- aACUCaGGUUCG----GGCGCGG---GUG-GUGG- -5'
11504 5' -59.9 NC_003085.1 + 46511 0.68 0.329428
Target:  5'- cUGGGUCCAccucuuuGGCCuCGUGCUCGacgucaCGCCc -3'
miRNA:   3'- aACUCAGGU-------UCGG-GCGCGGGUg-----GUGG- -5'
11504 5' -59.9 NC_003085.1 + 22860 0.68 0.32236
Target:  5'- -aGAGUCC-GGCa-GCGCCCACagguggUACCg -3'
miRNA:   3'- aaCUCAGGuUCGggCGCGGGUG------GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.