miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11505 3' -59.6 NC_003085.1 + 8544 0.66 0.480072
Target:  5'- uCGGCGcGCGGCGaGCuCGUCaCGGcaGGUc -3'
miRNA:   3'- uGUUGC-CGCCGC-CG-GUAG-GCCaaCCG- -5'
11505 3' -59.6 NC_003085.1 + 24364 0.66 0.480072
Target:  5'- gACGGCcuuuGGCGGCcgGGCCAUCaa--UGGCc -3'
miRNA:   3'- -UGUUG----CCGCCG--CCGGUAGgccaACCG- -5'
11505 3' -59.6 NC_003085.1 + 48530 0.66 0.477092
Target:  5'- gGCGAgGGCGcG-GGCCuuccaGUCCuccucucccgagcgGGUUGGCa -3'
miRNA:   3'- -UGUUgCCGC-CgCCGG-----UAGG--------------CCAACCG- -5'
11505 3' -59.6 NC_003085.1 + 45595 0.66 0.474121
Target:  5'- -aGACGGCgGGCGcGCCGUCgacgcgccgugguccUGGaugGGCa -3'
miRNA:   3'- ugUUGCCG-CCGC-CGGUAG---------------GCCaa-CCG- -5'
11505 3' -59.6 NC_003085.1 + 36687 0.66 0.470173
Target:  5'- gACAACGGCGGCagGGgCAUCaccccaGGCc -3'
miRNA:   3'- -UGUUGCCGCCG--CCgGUAGgccaa-CCG- -5'
11505 3' -59.6 NC_003085.1 + 19059 0.66 0.470173
Target:  5'- cGCGGCGcGCGGCGGagCAggcgCCGGgcccGGa -3'
miRNA:   3'- -UGUUGC-CGCCGCCg-GUa---GGCCaa--CCg -5'
11505 3' -59.6 NC_003085.1 + 14959 0.66 0.470173
Target:  5'- cGCGAaGcGCuGCGGCCcaccUCCGGgaGGCu -3'
miRNA:   3'- -UGUUgC-CGcCGCCGGu---AGGCCaaCCG- -5'
11505 3' -59.6 NC_003085.1 + 14342 0.66 0.467224
Target:  5'- cACAAUGGCa-CGGCCAUUaggacagaagccagCGGcUGGCu -3'
miRNA:   3'- -UGUUGCCGccGCCGGUAG--------------GCCaACCG- -5'
11505 3' -59.6 NC_003085.1 + 28233 0.66 0.46038
Target:  5'- cCAugGGUGGCGGCag--CGGUacuUGGg -3'
miRNA:   3'- uGUugCCGCCGCCGguagGCCA---ACCg -5'
11505 3' -59.6 NC_003085.1 + 15191 0.66 0.46038
Target:  5'- cACAAgGGCGGCuGCUacGUCCcuGUgaagGGCg -3'
miRNA:   3'- -UGUUgCCGCCGcCGG--UAGGc-CAa---CCG- -5'
11505 3' -59.6 NC_003085.1 + 30006 0.66 0.46038
Target:  5'- cCAGUGGcCGGUGuGCCA-CgGGUUGGUg -3'
miRNA:   3'- uGUUGCC-GCCGC-CGGUaGgCCAACCG- -5'
11505 3' -59.6 NC_003085.1 + 1249 0.66 0.46038
Target:  5'- gGCuGCGGaggcaGGUGGCCGaaUCCaaGGUgGGCc -3'
miRNA:   3'- -UGuUGCCg----CCGCCGGU--AGG--CCAaCCG- -5'
11505 3' -59.6 NC_003085.1 + 39800 0.66 0.451659
Target:  5'- uCGACGuuGGCGGCCGUCCcaaucuucacagGGCc -3'
miRNA:   3'- uGUUGCcgCCGCCGGUAGGccaa--------CCG- -5'
11505 3' -59.6 NC_003085.1 + 15622 0.66 0.450696
Target:  5'- uACGugGGcCGGUGGCCGggCGGagaGCg -3'
miRNA:   3'- -UGUugCC-GCCGCCGGUagGCCaacCG- -5'
11505 3' -59.6 NC_003085.1 + 46916 0.66 0.441124
Target:  5'- cACcGCGGCaGGCGGCaca--GGUUcGGCg -3'
miRNA:   3'- -UGuUGCCG-CCGCCGguaggCCAA-CCG- -5'
11505 3' -59.6 NC_003085.1 + 41385 0.66 0.440174
Target:  5'- cAUGACGGUGGUgggugacGGCCGUguugucggagccUCGGgcGGCa -3'
miRNA:   3'- -UGUUGCCGCCG-------CCGGUA------------GGCCaaCCG- -5'
11505 3' -59.6 NC_003085.1 + 27510 0.66 0.439224
Target:  5'- uACGACGGCGGCG-CCGgcaUGGaugacucccucgUGGCc -3'
miRNA:   3'- -UGUUGCCGCCGCcGGUag-GCCa-----------ACCG- -5'
11505 3' -59.6 NC_003085.1 + 22700 0.66 0.431669
Target:  5'- aGCAuccgguUGGUGGCgaagGGCCG-CCGGUUGaGUg -3'
miRNA:   3'- -UGUu-----GCCGCCG----CCGGUaGGCCAAC-CG- -5'
11505 3' -59.6 NC_003085.1 + 19342 0.67 0.422334
Target:  5'- cCGGCGGCGGauGgCGUCCGuGUagaggaGGCg -3'
miRNA:   3'- uGUUGCCGCCgcCgGUAGGC-CAa-----CCG- -5'
11505 3' -59.6 NC_003085.1 + 38858 0.67 0.413121
Target:  5'- uGCGACGGCGcGCGGCgacagCAUCauGUUcgGGUa -3'
miRNA:   3'- -UGUUGCCGC-CGCCG-----GUAGgcCAA--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.