miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11505 5' -58.3 NC_003085.1 + 3858 0.66 0.529357
Target:  5'- aGGACCacggCGCGUCgaCGGCGCGCC-Cg-- -3'
miRNA:   3'- -UCUGG----GUGUAGg-GCCGUGCGGuGaug -5'
11505 5' -58.3 NC_003085.1 + 26290 0.66 0.529357
Target:  5'- -uGCCaCGCAggUCgGGCugGCCAaCUACg -3'
miRNA:   3'- ucUGG-GUGUa-GGgCCGugCGGU-GAUG- -5'
11505 5' -58.3 NC_003085.1 + 4392 0.66 0.518851
Target:  5'- uAGAC--GCGUUCCGGCACGCUgg-GCg -3'
miRNA:   3'- -UCUGggUGUAGGGCCGUGCGGugaUG- -5'
11505 5' -58.3 NC_003085.1 + 16278 0.66 0.518851
Target:  5'- -cGCCCGCua-CUGGCGCGaCUACUGg -3'
miRNA:   3'- ucUGGGUGuagGGCCGUGC-GGUGAUg -5'
11505 5' -58.3 NC_003085.1 + 29365 0.66 0.518851
Target:  5'- cAGcCCCGCcaCCugCGGCACGUCACaGCg -3'
miRNA:   3'- -UCuGGGUGuaGG--GCCGUGCGGUGaUG- -5'
11505 5' -58.3 NC_003085.1 + 26012 0.66 0.51676
Target:  5'- uGGGCCUccgucauGCGUCCCuGCuGCGCCugcugggcgaagcGCUGCa -3'
miRNA:   3'- -UCUGGG-------UGUAGGGcCG-UGCGG-------------UGAUG- -5'
11505 5' -58.3 NC_003085.1 + 419 0.66 0.498096
Target:  5'- uGGACgCCA-GUCUCGGC-CGCguCUACg -3'
miRNA:   3'- -UCUG-GGUgUAGGGCCGuGCGguGAUG- -5'
11505 5' -58.3 NC_003085.1 + 9548 0.66 0.491942
Target:  5'- cGACCC-CAUCCCaaagagacggcguuuGGCcUGCCGCcGCc -3'
miRNA:   3'- uCUGGGuGUAGGG---------------CCGuGCGGUGaUG- -5'
11505 5' -58.3 NC_003085.1 + 12431 0.66 0.487859
Target:  5'- cAGGCCgGUGUCCgGGU-CGCCACUGa -3'
miRNA:   3'- -UCUGGgUGUAGGgCCGuGCGGUGAUg -5'
11505 5' -58.3 NC_003085.1 + 36848 0.66 0.487859
Target:  5'- cAGaAUCCAgCG-CCCGGgGCGCCACg-- -3'
miRNA:   3'- -UC-UGGGU-GUaGGGCCgUGCGGUGaug -5'
11505 5' -58.3 NC_003085.1 + 41635 0.66 0.487858
Target:  5'- uGGCCCAgG-CuuGGC-CGCCGCUcACc -3'
miRNA:   3'- uCUGGGUgUaGggCCGuGCGGUGA-UG- -5'
11505 5' -58.3 NC_003085.1 + 14548 0.66 0.477721
Target:  5'- -cGCCUGCAUCCacucguaGGC-CGCCACg-- -3'
miRNA:   3'- ucUGGGUGUAGGg------CCGuGCGGUGaug -5'
11505 5' -58.3 NC_003085.1 + 26898 0.66 0.47772
Target:  5'- uGGACUCAacacCGUCUCGGCgggcaGCGCCAUg-- -3'
miRNA:   3'- -UCUGGGU----GUAGGGCCG-----UGCGGUGaug -5'
11505 5' -58.3 NC_003085.1 + 43968 0.66 0.47772
Target:  5'- --cCUCACggCCCGGCcccACGCCGCg-- -3'
miRNA:   3'- ucuGGGUGuaGGGCCG---UGCGGUGaug -5'
11505 5' -58.3 NC_003085.1 + 20335 0.66 0.475706
Target:  5'- cGGACUCAaucgCCUGGUuccgcgccgcguCGCCGCUGCu -3'
miRNA:   3'- -UCUGGGUgua-GGGCCGu-----------GCGGUGAUG- -5'
11505 5' -58.3 NC_003085.1 + 24637 0.67 0.457765
Target:  5'- -cGCCUcgGCGUCCUGGUugaaagccgcGCGCCGCgACg -3'
miRNA:   3'- ucUGGG--UGUAGGGCCG----------UGCGGUGaUG- -5'
11505 5' -58.3 NC_003085.1 + 24798 0.67 0.456779
Target:  5'- uGGugCCGCucagcccGUCgCGGCGCGCgGCUu- -3'
miRNA:   3'- -UCugGGUG-------UAGgGCCGUGCGgUGAug -5'
11505 5' -58.3 NC_003085.1 + 12780 0.67 0.447956
Target:  5'- cAGGCCCGgAaUCCGGCGC-CCGcCUAUg -3'
miRNA:   3'- -UCUGGGUgUaGGGCCGUGcGGU-GAUG- -5'
11505 5' -58.3 NC_003085.1 + 38641 0.67 0.43538
Target:  5'- --uCCCGCAgucgcugCCCGGUGCGCguuuccacucgcacCGCUGCg -3'
miRNA:   3'- ucuGGGUGUa------GGGCCGUGCG--------------GUGAUG- -5'
11505 5' -58.3 NC_003085.1 + 29365 0.67 0.428694
Target:  5'- aGGACaUgGCcgCCCGGCagaACGCCAUgGCg -3'
miRNA:   3'- -UCUG-GgUGuaGGGCCG---UGCGGUGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.