miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11506 3' -54.1 NC_003085.1 + 12409 0.66 0.762334
Target:  5'- cUCGACccggCGggGccgcugcgcuccGAGGAGGCugUGUCGUg -3'
miRNA:   3'- -AGCUGa---GCuuC------------CUUCUCCG--ACAGCGa -5'
11506 3' -54.1 NC_003085.1 + 30499 0.66 0.738105
Target:  5'- -gGACUCGAcgacagccagaugcAGGAacaGGAGGCgg-CGCg -3'
miRNA:   3'- agCUGAGCU--------------UCCU---UCUCCGacaGCGa -5'
11506 3' -54.1 NC_003085.1 + 4410 0.66 0.730609
Target:  5'- -gGACagcCGgcGGAGGAGGCUGgCGaCUg -3'
miRNA:   3'- agCUGa--GCuuCCUUCUCCGACaGC-GA- -5'
11506 3' -54.1 NC_003085.1 + 10065 0.66 0.730609
Target:  5'- aCGAgcCUgGAGGcGAAGAGGUUGgCGCc -3'
miRNA:   3'- aGCU--GAgCUUC-CUUCUCCGACaGCGa -5'
11506 3' -54.1 NC_003085.1 + 42883 0.67 0.708929
Target:  5'- gCGugUCGAGGGu-GAGGCcgagGUCcuGCg -3'
miRNA:   3'- aGCugAGCUUCCuuCUCCGa---CAG--CGa -5'
11506 3' -54.1 NC_003085.1 + 5715 0.67 0.686939
Target:  5'- -gGACUCGGccgucuacucgcGGGccGAGGUcGUCGCa -3'
miRNA:   3'- agCUGAGCU------------UCCuuCUCCGaCAGCGa -5'
11506 3' -54.1 NC_003085.1 + 49345 0.67 0.675856
Target:  5'- aUCcAC-CGAGGGAAGcGGGCgGUCGUg -3'
miRNA:   3'- -AGcUGaGCUUCCUUC-UCCGaCAGCGa -5'
11506 3' -54.1 NC_003085.1 + 11609 0.67 0.674745
Target:  5'- gCGGCgCGAAGGGgcugugcAGGGGCUGcuaccagCGCg -3'
miRNA:   3'- aGCUGaGCUUCCU-------UCUCCGACa------GCGa -5'
11506 3' -54.1 NC_003085.1 + 18780 0.68 0.608848
Target:  5'- -gGACaaagCGAAGGc---GGCUGUCGCUg -3'
miRNA:   3'- agCUGa---GCUUCCuucuCCGACAGCGA- -5'
11506 3' -54.1 NC_003085.1 + 38114 0.68 0.608848
Target:  5'- aUCGuCUCGGAGGugccguGAGGCUcGcCGCc -3'
miRNA:   3'- -AGCuGAGCUUCCuu----CUCCGA-CaGCGa -5'
11506 3' -54.1 NC_003085.1 + 25759 0.74 0.291115
Target:  5'- cCGuCUUGAcGGAGGAGGCUGcugCGCg -3'
miRNA:   3'- aGCuGAGCUuCCUUCUCCGACa--GCGa -5'
11506 3' -54.1 NC_003085.1 + 4029 1.08 0.001398
Target:  5'- uUCGACUCGAAGGAAGAGGCUGUCGCUc -3'
miRNA:   3'- -AGCUGAGCUUCCUUCUCCGACAGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.