miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11506 5' -51.5 NC_003085.1 + 14307 0.66 0.890015
Target:  5'- gGAAcCUCCUGCcgCUCaUGUUGcggcAGCCg -3'
miRNA:   3'- -CUUuGAGGACGaaGAGaGCAGC----UCGG- -5'
11506 5' -51.5 NC_003085.1 + 16949 0.66 0.882356
Target:  5'- --uACUCCUGCggaagcgccggUUCaUCUCcgucagGUCGAGCUu -3'
miRNA:   3'- cuuUGAGGACG-----------AAG-AGAG------CAGCUCGG- -5'
11506 5' -51.5 NC_003085.1 + 14424 0.66 0.882356
Target:  5'- aGAuGCUCCgcgaggGCUggccCUCuacggcuaUCGUCGAGCg -3'
miRNA:   3'- -CUuUGAGGa-----CGAa---GAG--------AGCAGCUCGg -5'
11506 5' -51.5 NC_003085.1 + 34610 0.67 0.80891
Target:  5'- ----gUCCUGCUUCUCcgucuucguccgcuUCGUCuucguGGCCa -3'
miRNA:   3'- cuuugAGGACGAAGAG--------------AGCAGc----UCGG- -5'
11506 5' -51.5 NC_003085.1 + 35240 0.67 0.805963
Target:  5'- cGGGCcCCUGCUUCcgcuugcgcgcgggCUUGUCGcAGCCc -3'
miRNA:   3'- cUUUGaGGACGAAGa-------------GAGCAGC-UCGG- -5'
11506 5' -51.5 NC_003085.1 + 15676 0.68 0.781781
Target:  5'- aGAACUCCU-CcUCUCU-GUCGGGCa -3'
miRNA:   3'- cUUUGAGGAcGaAGAGAgCAGCUCGg -5'
11506 5' -51.5 NC_003085.1 + 29912 0.68 0.771412
Target:  5'- aGGuuCUCCaGgUUCUCcgCGUCGGGCg -3'
miRNA:   3'- -CUuuGAGGaCgAAGAGa-GCAGCUCGg -5'
11506 5' -51.5 NC_003085.1 + 5713 0.68 0.750225
Target:  5'- cGGGACUCg-GCcgUCUaCUCG-CGGGCCg -3'
miRNA:   3'- -CUUUGAGgaCGa-AGA-GAGCaGCUCGG- -5'
11506 5' -51.5 NC_003085.1 + 18961 0.68 0.750225
Target:  5'- ----gUCCUGCaucuggCUgUCGUCGAGUCc -3'
miRNA:   3'- cuuugAGGACGaa----GAgAGCAGCUCGG- -5'
11506 5' -51.5 NC_003085.1 + 40475 0.77 0.291266
Target:  5'- uGGGACUCCUGUcgCUgCuggcgggcgUCGUCGAGCCg -3'
miRNA:   3'- -CUUUGAGGACGaaGA-G---------AGCAGCUCGG- -5'
11506 5' -51.5 NC_003085.1 + 4063 1.14 0.001019
Target:  5'- cGAAACUCCUGCUUCUCUCGUCGAGCCa -3'
miRNA:   3'- -CUUUGAGGACGAAGAGAGCAGCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.