miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11508 3' -54.8 NC_003085.1 + 47375 0.72 0.384744
Target:  5'- cGAggUGCGGCgGCUGCGCuCGUCGCGUc -3'
miRNA:   3'- -CUuaACGCUG-CGAUGCGcGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 28485 0.72 0.341319
Target:  5'- ---cUGCG-UGCUgACGCGCAaCGCGCg -3'
miRNA:   3'- cuuaACGCuGCGA-UGCGCGUgGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 20514 0.72 0.341319
Target:  5'- ----cGCGACGa-GCGCGacuCCGCGCa -3'
miRNA:   3'- cuuaaCGCUGCgaUGCGCgu-GGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 40646 0.72 0.349714
Target:  5'- ----cGCccuGACGCUG-GCuGCGCCGCGCa -3'
miRNA:   3'- cuuaaCG---CUGCGAUgCG-CGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 26020 0.72 0.382038
Target:  5'- cGAAUUgGCGACGCUGCGCcagcaguugaaggaGCAgggcgaGCGCa -3'
miRNA:   3'- -CUUAA-CGCUGCGAUGCG--------------CGUgg----CGCG- -5'
11508 3' -54.8 NC_003085.1 + 18961 0.72 0.341319
Target:  5'- ----cGCGACGgugGCGCGCuucCUGCGCa -3'
miRNA:   3'- cuuaaCGCUGCga-UGCGCGu--GGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 15116 0.71 0.422021
Target:  5'- ----aGCgGAUGgaGCGcCGCGCCGCGUg -3'
miRNA:   3'- cuuaaCG-CUGCgaUGC-GCGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 23116 0.71 0.422021
Target:  5'- ----aGCGAgGCgGCGCaGCACCGCa- -3'
miRNA:   3'- cuuaaCGCUgCGaUGCG-CGUGGCGcg -5'
11508 3' -54.8 NC_003085.1 + 19211 0.71 0.40311
Target:  5'- ----gGCGGCGgggGCuGgGCGCCGCGCa -3'
miRNA:   3'- cuuaaCGCUGCga-UG-CgCGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 10586 0.71 0.402178
Target:  5'- -uGUUGCaguacccgaacauGAUGCUGucgcCGCGCGCCGuCGCa -3'
miRNA:   3'- cuUAACG-------------CUGCGAU----GCGCGUGGC-GCG- -5'
11508 3' -54.8 NC_003085.1 + 26347 0.71 0.412498
Target:  5'- --cUUGCGGUGCUGCGC-CGCCuCGCu -3'
miRNA:   3'- cuuAACGCUGCGAUGCGcGUGGcGCG- -5'
11508 3' -54.8 NC_003085.1 + 5099 0.71 0.412498
Target:  5'- gGAGUUGgaGGCGUUucuCGCGuCGCCGCGg -3'
miRNA:   3'- -CUUAACg-CUGCGAu--GCGC-GUGGCGCg -5'
11508 3' -54.8 NC_003085.1 + 11770 0.7 0.451361
Target:  5'- -----aCGACGgUACgGCgGCGCCGCGCu -3'
miRNA:   3'- cuuaacGCUGCgAUG-CG-CGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 25457 0.7 0.451361
Target:  5'- -cGUUGuCGGCGaugACGC-CACUGCGCg -3'
miRNA:   3'- cuUAAC-GCUGCga-UGCGcGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 46841 0.7 0.461387
Target:  5'- cGAGUUGCGACGCca-GCGU-CUGgGCc -3'
miRNA:   3'- -CUUAACGCUGCGaugCGCGuGGCgCG- -5'
11508 3' -54.8 NC_003085.1 + 8115 0.7 0.445403
Target:  5'- aAGUUG-GGCGCUgaugACGUgguggaccugcucaaGCGCCGCGCa -3'
miRNA:   3'- cUUAACgCUGCGA----UGCG---------------CGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 2075 0.7 0.461387
Target:  5'- cGGAcgGUGACGCgacgaGCGCAgCCGcCGCa -3'
miRNA:   3'- -CUUaaCGCUGCGaug--CGCGU-GGC-GCG- -5'
11508 3' -54.8 NC_003085.1 + 21608 0.7 0.481784
Target:  5'- ---aUGCGugGCgcgaGCGaC-CCGCGCg -3'
miRNA:   3'- cuuaACGCugCGaug-CGC-GuGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 28797 0.7 0.47153
Target:  5'- cGAGUUGCGGCGCgaggaGUGCCGCugGCu -3'
miRNA:   3'- -CUUAACGCUGCGaugcgCGUGGCG--CG- -5'
11508 3' -54.8 NC_003085.1 + 47548 0.7 0.461387
Target:  5'- ----cGCGA-GCgAUGCGCAgCGCGCu -3'
miRNA:   3'- cuuaaCGCUgCGaUGCGCGUgGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.