miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11508 3' -54.8 NC_003085.1 + 30655 0.66 0.710921
Target:  5'- ----gGCGAguCGCUGCggcaggGCGCuCUGCGCc -3'
miRNA:   3'- cuuaaCGCU--GCGAUG------CGCGuGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 25992 0.66 0.707661
Target:  5'- cGAAUgccuCGACGCUGCGCugggccuccgucauGCgucccuGCUGCGCc -3'
miRNA:   3'- -CUUAac--GCUGCGAUGCG--------------CG------UGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 47312 0.66 0.706572
Target:  5'- ----gGCGACGUUGuccaccaucuccaGCGCGCCGCc- -3'
miRNA:   3'- cuuaaCGCUGCGAUg------------CGCGUGGCGcg -5'
11508 3' -54.8 NC_003085.1 + 9959 0.66 0.700027
Target:  5'- ----aGCGACGag--GCGCACCG-GCu -3'
miRNA:   3'- cuuaaCGCUGCgaugCGCGUGGCgCG- -5'
11508 3' -54.8 NC_003085.1 + 2501 0.66 0.700027
Target:  5'- ----gGCGugGCUGacggacggUGUGC-CCGCGUc -3'
miRNA:   3'- cuuaaCGCugCGAU--------GCGCGuGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 18149 0.66 0.700027
Target:  5'- ---cUGCuGAgGCUucggugucggGCGCGCcugcCCGCGCu -3'
miRNA:   3'- cuuaACG-CUgCGA----------UGCGCGu---GGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 49288 0.66 0.700027
Target:  5'- ---cUGUGGCuGCUGCGuCGCGuCgGCGUc -3'
miRNA:   3'- cuuaACGCUG-CGAUGC-GCGU-GgCGCG- -5'
11508 3' -54.8 NC_003085.1 + 15481 0.66 0.700027
Target:  5'- ----cGCGGCGC-AgGgGUGCCGUGUg -3'
miRNA:   3'- cuuaaCGCUGCGaUgCgCGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 3686 0.66 0.698934
Target:  5'- cGAGUUGCGuugggaugcggccACGCaGCGCGacguGCCaCGCg -3'
miRNA:   3'- -CUUAACGC-------------UGCGaUGCGCg---UGGcGCG- -5'
11508 3' -54.8 NC_003085.1 + 10459 0.66 0.696745
Target:  5'- ----cGCGGCGCuUugGCGCcccucggcuggccgACCugcuGCGCg -3'
miRNA:   3'- cuuaaCGCUGCG-AugCGCG--------------UGG----CGCG- -5'
11508 3' -54.8 NC_003085.1 + 30494 0.66 0.689065
Target:  5'- -cGUUGCuGCGCaggaaGCGCGCcACCGUcgGCg -3'
miRNA:   3'- cuUAACGcUGCGa----UGCGCG-UGGCG--CG- -5'
11508 3' -54.8 NC_003085.1 + 3611 0.66 0.689065
Target:  5'- ----gGCucCGCcuggACGUGCGCCGCGa -3'
miRNA:   3'- cuuaaCGcuGCGa---UGCGCGUGGCGCg -5'
11508 3' -54.8 NC_003085.1 + 36623 0.66 0.689065
Target:  5'- --cUUGCGugGCaUugGCG-GCCaacaGCGCa -3'
miRNA:   3'- cuuAACGCugCG-AugCGCgUGG----CGCG- -5'
11508 3' -54.8 NC_003085.1 + 6708 0.66 0.689065
Target:  5'- ----cGCGGCGauggAUGCcgucCACCGCGCc -3'
miRNA:   3'- cuuaaCGCUGCga--UGCGc---GUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 24457 0.66 0.689065
Target:  5'- ----aGCGGCGCcuucUGCACCGCGg -3'
miRNA:   3'- cuuaaCGCUGCGaugcGCGUGGCGCg -5'
11508 3' -54.8 NC_003085.1 + 4153 0.66 0.689065
Target:  5'- ----aGCGACuGCUG-GCGCAacuCCGCGa -3'
miRNA:   3'- cuuaaCGCUG-CGAUgCGCGU---GGCGCg -5'
11508 3' -54.8 NC_003085.1 + 16342 0.66 0.689065
Target:  5'- ---cUGCGGCGCUAgggaGCGUucgACaGCGCc -3'
miRNA:   3'- cuuaACGCUGCGAUg---CGCG---UGgCGCG- -5'
11508 3' -54.8 NC_003085.1 + 2728 0.66 0.678048
Target:  5'- ----gGCGGCugGCaGCGCGCGCgaagGCGCu -3'
miRNA:   3'- cuuaaCGCUG--CGaUGCGCGUGg---CGCG- -5'
11508 3' -54.8 NC_003085.1 + 47708 0.66 0.678048
Target:  5'- cGAGUcGuCGACuGCUGCGCcugcugacggGCGCgGUGCg -3'
miRNA:   3'- -CUUAaC-GCUG-CGAUGCG----------CGUGgCGCG- -5'
11508 3' -54.8 NC_003085.1 + 42815 0.67 0.666985
Target:  5'- cGAGUUGgGACGCca---GCACCuuGCGCu -3'
miRNA:   3'- -CUUAACgCUGCGaugcgCGUGG--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.