Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11508 | 5' | -57 | NC_003085.1 | + | 28875 | 0.68 | 0.473713 |
Target: 5'- cGGCGCugccgagcAGCAGUCGcagGCGuCUCagcagaGCAUCa -3' miRNA: 3'- uCCGCG--------UCGUCAGC---UGCuGAG------CGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 11746 | 0.68 | 0.463632 |
Target: 5'- gGGGUuccgucGUAGCAGUCGACG---CGCAUUg -3' miRNA: 3'- -UCCG------CGUCGUCAGCUGCugaGCGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 34190 | 0.68 | 0.453664 |
Target: 5'- cGGGCGCGGCGGgUGAgcuCGGC-CGCGg- -3' miRNA: 3'- -UCCGCGUCGUCaGCU---GCUGaGCGUag -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 48842 | 0.68 | 0.443815 |
Target: 5'- uGGCGCAGCacaacccgccguAGgccgCGACGgGCUUGCAgUCg -3' miRNA: 3'- uCCGCGUCG------------UCa---GCUGC-UGAGCGU-AG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 20628 | 0.69 | 0.378438 |
Target: 5'- cGGCGCuucGCGGacgCGGacgaugacgUGGCUCGCGUCg -3' miRNA: 3'- uCCGCGu--CGUCa--GCU---------GCUGAGCGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 3911 | 0.69 | 0.378438 |
Target: 5'- -uGCGCgAGgAGUUGACacgccaGGCUCGCGUCg -3' miRNA: 3'- ucCGCG-UCgUCAGCUG------CUGAGCGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 38435 | 0.69 | 0.377552 |
Target: 5'- cGGGCcugucuCGGCGGUCGACGAguucuuccagcaaCUCGCGa- -3' miRNA: 3'- -UCCGc-----GUCGUCAGCUGCU-------------GAGCGUag -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 47369 | 0.7 | 0.36964 |
Target: 5'- uGGCGCcgAGguG-CGGCGGCugcgcucgUCGCGUCa -3' miRNA: 3'- uCCGCG--UCguCaGCUGCUG--------AGCGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 2791 | 0.7 | 0.360983 |
Target: 5'- cGGCGCuccaGGCGG-CGGCGAagcgcCUCgGCAUCa -3' miRNA: 3'- uCCGCG----UCGUCaGCUGCU-----GAG-CGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 23443 | 0.71 | 0.323005 |
Target: 5'- cAGGCGCAGCAGg-GACGcaugacggaggcccaGCgcaGCGUCg -3' miRNA: 3'- -UCCGCGUCGUCagCUGC---------------UGag-CGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 12025 | 0.71 | 0.312054 |
Target: 5'- cGGGCGCGG-GGUUGGCG-CUCGCu-- -3' miRNA: 3'- -UCCGCGUCgUCAGCUGCuGAGCGuag -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 3686 | 0.71 | 0.282329 |
Target: 5'- cGGCGCGGCgAGUCcuGACG-C-CGCGUCc -3' miRNA: 3'- uCCGCGUCG-UCAG--CUGCuGaGCGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 49160 | 0.71 | 0.282329 |
Target: 5'- cGGGgGCAGCGGaCGGgGACUCgGCgGUCa -3' miRNA: 3'- -UCCgCGUCGUCaGCUgCUGAG-CG-UAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 13303 | 0.72 | 0.248383 |
Target: 5'- cGGCG-AGCGGUCGGCGACcauCAUCa -3' miRNA: 3'- uCCGCgUCGUCAGCUGCUGagcGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 18356 | 0.74 | 0.206609 |
Target: 5'- gGGGCGguGCAGgcCGugGAgUCGCuGUCc -3' miRNA: 3'- -UCCGCguCGUCa-GCugCUgAGCG-UAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 29105 | 0.75 | 0.175773 |
Target: 5'- cGGCGuCAGCAG-CGGCGACgcggCGCGg- -3' miRNA: 3'- uCCGC-GUCGUCaGCUGCUGa---GCGUag -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 1757 | 1.09 | 0.00054 |
Target: 5'- cAGGCGCAGCAGUCGACGACUCGCAUCu -3' miRNA: 3'- -UCCGCGUCGUCAGCUGCUGAGCGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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