Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11509 | 3' | -54.7 | NC_003085.1 | + | 7208 | 0.66 | 0.723454 |
Target: 5'- ---cCGCGCCCUGccGcUGGAGuaGCGCg -3' miRNA: 3'- guucGCGCGGGACuuCcACUUC--UGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 5830 | 0.66 | 0.723454 |
Target: 5'- gAGGCGUcaGCCCUGcAGGUccggGAcugGGACGg -3' miRNA: 3'- gUUCGCG--CGGGACuUCCA----CU---UCUGCg -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 45913 | 0.66 | 0.723454 |
Target: 5'- -cGGC-CGCCUUGAGcGUGGuccaagGGGCGCa -3' miRNA: 3'- guUCGcGCGGGACUUcCACU------UCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 985 | 0.66 | 0.701692 |
Target: 5'- gAGGCGCuuGCCgaGAgcacgccaAGGcUGAGGugGCc -3' miRNA: 3'- gUUCGCG--CGGgaCU--------UCC-ACUUCugCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 26470 | 0.66 | 0.700596 |
Target: 5'- -cGGCGCGCgcaccucuggcugCUUGggGGUGGcAGACu- -3' miRNA: 3'- guUCGCGCG-------------GGACuuCCACU-UCUGcg -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 26201 | 0.66 | 0.690701 |
Target: 5'- aCGAGCuGCGCCUUGugcgcgGgcGGCGCg -3' miRNA: 3'- -GUUCG-CGCGGGACuucca-CuuCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 15123 | 0.66 | 0.723454 |
Target: 5'- gGAGCGcCGCgCCgcguGGUGcgacgagcacGAGACGCa -3' miRNA: 3'- gUUCGC-GCG-GGacuuCCAC----------UUCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 32804 | 0.67 | 0.668555 |
Target: 5'- aCAGGCaGCGCCCguccUGAAGGcauucaGCGCa -3' miRNA: 3'- -GUUCG-CGCGGG----ACUUCCacuuc-UGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 705 | 0.67 | 0.668555 |
Target: 5'- uCGGGCGCGgCCUGAgcAGGUccacccGCGCc -3' miRNA: 3'- -GUUCGCGCgGGACU--UCCAcuuc--UGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 15778 | 0.67 | 0.668555 |
Target: 5'- uGAGCGCGUcaacgcguuUCUGGAGGccaagUGAAcGCGCu -3' miRNA: 3'- gUUCGCGCG---------GGACUUCC-----ACUUcUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 31307 | 0.67 | 0.646268 |
Target: 5'- gCAGGCGCGCCCgacaccGAAGccucaGcAGACGUc -3' miRNA: 3'- -GUUCGCGCGGGa-----CUUCca---CuUCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 48855 | 0.67 | 0.668555 |
Target: 5'- uCGAGCGCGCCC---AGGac--GGCGCc -3' miRNA: 3'- -GUUCGCGCGGGacuUCCacuuCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 40560 | 0.67 | 0.668555 |
Target: 5'- gAGGCGCaagGCCUUGGuggcGGUGcgcaugccAGACGCg -3' miRNA: 3'- gUUCGCG---CGGGACUu---CCACu-------UCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 5319 | 0.67 | 0.657423 |
Target: 5'- gCGAGCGCGUggccaCgCUGGAGGcGAAGucaGCa -3' miRNA: 3'- -GUUCGCGCG-----G-GACUUCCaCUUCug-CG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 17646 | 0.67 | 0.623928 |
Target: 5'- gCAGGCGUgaGCCacgGGAGG--GAGGCGCu -3' miRNA: 3'- -GUUCGCG--CGGga-CUUCCacUUCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 20088 | 0.67 | 0.623928 |
Target: 5'- --cGCGCGCUgUGAcgugccgcAGGUGgcGGgGCu -3' miRNA: 3'- guuCGCGCGGgACU--------UCCACuuCUgCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 13793 | 0.67 | 0.645151 |
Target: 5'- gCGAGCGUgacGCCagucugcgUGGAGGUGGcgccaugacgugcAGACGCc -3' miRNA: 3'- -GUUCGCG---CGGg-------ACUUCCACU-------------UCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 7605 | 0.67 | 0.646268 |
Target: 5'- ---aCGCGUCCgaUGucGGUGAAGugGUu -3' miRNA: 3'- guucGCGCGGG--ACuuCCACUUCugCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 13572 | 0.67 | 0.646268 |
Target: 5'- aAGGCGCGCgUgGAcguGGGcaccGGAGGCGCg -3' miRNA: 3'- gUUCGCGCGgGaCU---UCCa---CUUCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 3104 | 0.67 | 0.657423 |
Target: 5'- aAGGCGCGgCUUGAGGcGaUGcucgaccuugaGAGGCGCg -3' miRNA: 3'- gUUCGCGCgGGACUUC-C-AC-----------UUCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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