miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11509 3' -54.7 NC_003085.1 + 21626 0.68 0.601617
Target:  5'- gGAGUGCGUuguCCUcuGGGUGGAGuuGCa -3'
miRNA:   3'- gUUCGCGCG---GGAcuUCCACUUCugCG- -5'
11509 3' -54.7 NC_003085.1 + 22303 0.68 0.601617
Target:  5'- -cAGCGuCGCCCgucugguccccGAAGGUGAgcaccugcguGGGCGUc -3'
miRNA:   3'- guUCGC-GCGGGa----------CUUCCACU----------UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 22603 0.71 0.432285
Target:  5'- gCAGGUGCGCCUccugaaucGAGGGUGGcGGGgGCa -3'
miRNA:   3'- -GUUCGCGCGGGa-------CUUCCACU-UCUgCG- -5'
11509 3' -54.7 NC_003085.1 + 24593 0.7 0.493024
Target:  5'- --uGgGCGCCgCUGcAGGUGAGGuuGCc -3'
miRNA:   3'- guuCgCGCGG-GACuUCCACUUCugCG- -5'
11509 3' -54.7 NC_003085.1 + 25276 0.71 0.436199
Target:  5'- -cGGCGCGCCCgucuaccucaccgcGAcggccggccAGGUGGAcGACGCc -3'
miRNA:   3'- guUCGCGCGGGa-------------CU---------UCCACUU-CUGCG- -5'
11509 3' -54.7 NC_003085.1 + 25612 0.66 0.712614
Target:  5'- cCAAGCGCGaCgaGGAGGaGAcgacgaaggccGGGCGCc -3'
miRNA:   3'- -GUUCGCGCgGgaCUUCCaCU-----------UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 25773 0.7 0.482617
Target:  5'- gCGGGCaaGUCCgacgUGcAGGUGggGACGCc -3'
miRNA:   3'- -GUUCGcgCGGG----ACuUCCACuuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 25919 0.72 0.373464
Target:  5'- cCGAGCaGCGCCCUGGAGGaGcAucugcauucuucacGGACGUc -3'
miRNA:   3'- -GUUCG-CGCGGGACUUCCaC-U--------------UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 25924 0.74 0.286686
Target:  5'- --uGCGUGCCCUcguggaGAAGGcGAAGACuGCg -3'
miRNA:   3'- guuCGCGCGGGA------CUUCCaCUUCUG-CG- -5'
11509 3' -54.7 NC_003085.1 + 26201 0.66 0.690701
Target:  5'- aCGAGCuGCGCCUUGugcgcgGgcGGCGCg -3'
miRNA:   3'- -GUUCG-CGCGGGACuucca-CuuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 26470 0.66 0.700596
Target:  5'- -cGGCGCGCgcaccucuggcugCUUGggGGUGGcAGACu- -3'
miRNA:   3'- guUCGCGCG-------------GGACuuCCACU-UCUGcg -5'
11509 3' -54.7 NC_003085.1 + 26709 0.77 0.177632
Target:  5'- uCGAGCGCGCgCagGgcGGUGAcGGCGCg -3'
miRNA:   3'- -GUUCGCGCGgGa-CuuCCACUuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 27369 0.66 0.723454
Target:  5'- -cAGCGCGUCUggcuGGUGGA-ACGCg -3'
miRNA:   3'- guUCGCGCGGGacuuCCACUUcUGCG- -5'
11509 3' -54.7 NC_003085.1 + 27775 0.67 0.646268
Target:  5'- gAAGCGggccaccuCGUCCUGGAGGcgcUGAagccGGAUGCu -3'
miRNA:   3'- gUUCGC--------GCGGGACUUCC---ACU----UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 28121 0.69 0.53561
Target:  5'- -uGGCGCGCuCCaGcAGGGUGAu-GCGCg -3'
miRNA:   3'- guUCGCGCG-GGaC-UUCCACUucUGCG- -5'
11509 3' -54.7 NC_003085.1 + 28505 0.66 0.723454
Target:  5'- --cGCGCGCCauucaGgcGGUG--GACGCg -3'
miRNA:   3'- guuCGCGCGGga---CuuCCACuuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 29127 0.74 0.261287
Target:  5'- gAGGCGCcgugGCCCagaguucauccagggUGAAGGUGGcGGGCGCg -3'
miRNA:   3'- gUUCGCG----CGGG---------------ACUUCCACU-UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 29217 0.66 0.679651
Target:  5'- gCGAcUGCGCCaccugggcGAAGGUGgcGACGUa -3'
miRNA:   3'- -GUUcGCGCGGga------CUUCCACuuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 30001 0.68 0.568374
Target:  5'- gGAGCG-GCCCUGGGcGGccuUGgcGACGUc -3'
miRNA:   3'- gUUCGCgCGGGACUU-CC---ACuuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 30328 0.7 0.482617
Target:  5'- -cAGCGgGCCCUGgcGGacgcUGucgcGGGGCGCa -3'
miRNA:   3'- guUCGCgCGGGACuuCC----AC----UUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.