Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11509 | 3' | -54.7 | NC_003085.1 | + | 32637 | 0.66 | 0.690701 |
Target: 5'- uCAAGCGCaGCCUcc-AGGacAAGGCGCa -3' miRNA: 3'- -GUUCGCG-CGGGacuUCCacUUCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 32277 | 0.66 | 0.700596 |
Target: 5'- cCAAGCGCGCggaacucCCggcaGAGGUGGuucaGGAgGCa -3' miRNA: 3'- -GUUCGCGCG-------GGac--UUCCACU----UCUgCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 31829 | 0.75 | 0.226662 |
Target: 5'- gGAGCGCGCagcGAAGGuUGAAGcACGCg -3' miRNA: 3'- gUUCGCGCGggaCUUCC-ACUUC-UGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 31307 | 0.67 | 0.646268 |
Target: 5'- gCAGGCGCGCCCgacaccGAAGccucaGcAGACGUc -3' miRNA: 3'- -GUUCGCGCGGGa-----CUUCca---CuUCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 30507 | 0.7 | 0.466191 |
Target: 5'- gAAGCGCgccaccgucggcgggGCCCUGuAGGcGAuGGCGCu -3' miRNA: 3'- gUUCGCG---------------CGGGACuUCCaCUuCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 30328 | 0.7 | 0.482617 |
Target: 5'- -cAGCGgGCCCUGgcGGacgcUGucgcGGGGCGCa -3' miRNA: 3'- guUCGCgCGGGACuuCC----AC----UUCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 30001 | 0.68 | 0.568374 |
Target: 5'- gGAGCG-GCCCUGGGcGGccuUGgcGACGUc -3' miRNA: 3'- gUUCGCgCGGGACUU-CC---ACuuCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 29217 | 0.66 | 0.679651 |
Target: 5'- gCGAcUGCGCCaccugggcGAAGGUGgcGACGUa -3' miRNA: 3'- -GUUcGCGCGGga------CUUCCACuuCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 29127 | 0.74 | 0.261287 |
Target: 5'- gAGGCGCcgugGCCCagaguucauccagggUGAAGGUGGcGGGCGCg -3' miRNA: 3'- gUUCGCG----CGGG---------------ACUUCCACU-UCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 28505 | 0.66 | 0.723454 |
Target: 5'- --cGCGCGCCauucaGgcGGUG--GACGCg -3' miRNA: 3'- guuCGCGCGGga---CuuCCACuuCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 28121 | 0.69 | 0.53561 |
Target: 5'- -uGGCGCGCuCCaGcAGGGUGAu-GCGCg -3' miRNA: 3'- guUCGCGCG-GGaC-UUCCACUucUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 27775 | 0.67 | 0.646268 |
Target: 5'- gAAGCGggccaccuCGUCCUGGAGGcgcUGAagccGGAUGCu -3' miRNA: 3'- gUUCGC--------GCGGGACUUCC---ACU----UCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 27369 | 0.66 | 0.723454 |
Target: 5'- -cAGCGCGUCUggcuGGUGGA-ACGCg -3' miRNA: 3'- guUCGCGCGGGacuuCCACUUcUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 26709 | 0.77 | 0.177632 |
Target: 5'- uCGAGCGCGCgCagGgcGGUGAcGGCGCg -3' miRNA: 3'- -GUUCGCGCGgGa-CuuCCACUuCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 26470 | 0.66 | 0.700596 |
Target: 5'- -cGGCGCGCgcaccucuggcugCUUGggGGUGGcAGACu- -3' miRNA: 3'- guUCGCGCG-------------GGACuuCCACU-UCUGcg -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 26201 | 0.66 | 0.690701 |
Target: 5'- aCGAGCuGCGCCUUGugcgcgGgcGGCGCg -3' miRNA: 3'- -GUUCG-CGCGGGACuucca-CuuCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 25924 | 0.74 | 0.286686 |
Target: 5'- --uGCGUGCCCUcguggaGAAGGcGAAGACuGCg -3' miRNA: 3'- guuCGCGCGGGA------CUUCCaCUUCUG-CG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 25919 | 0.72 | 0.373464 |
Target: 5'- cCGAGCaGCGCCCUGGAGGaGcAucugcauucuucacGGACGUc -3' miRNA: 3'- -GUUCG-CGCGGGACUUCCaC-U--------------UCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 25773 | 0.7 | 0.482617 |
Target: 5'- gCGGGCaaGUCCgacgUGcAGGUGggGACGCc -3' miRNA: 3'- -GUUCGcgCGGG----ACuUCCACuuCUGCG- -5' |
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11509 | 3' | -54.7 | NC_003085.1 | + | 25612 | 0.66 | 0.712614 |
Target: 5'- cCAAGCGCGaCgaGGAGGaGAcgacgaaggccGGGCGCc -3' miRNA: 3'- -GUUCGCGCgGgaCUUCCaCU-----------UCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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