miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11509 3' -54.7 NC_003085.1 + 15958 0.68 0.601617
Target:  5'- -uGGCGCuCCCUuggccgcugGGAGGUGggG-CGUg -3'
miRNA:   3'- guUCGCGcGGGA---------CUUCCACuuCuGCG- -5'
11509 3' -54.7 NC_003085.1 + 3104 0.67 0.657423
Target:  5'- aAGGCGCGgCUUGAGGcGaUGcucgaccuugaGAGGCGCg -3'
miRNA:   3'- gUUCGCGCgGGACUUC-C-AC-----------UUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 6276 0.72 0.341543
Target:  5'- uGGGaUGCGCUCUGuAGG-GAAGugGCg -3'
miRNA:   3'- gUUC-GCGCGGGACuUCCaCUUCugCG- -5'
11509 3' -54.7 NC_003085.1 + 25924 0.74 0.286686
Target:  5'- --uGCGUGCCCUcguggaGAAGGcGAAGACuGCg -3'
miRNA:   3'- guuCGCGCGGGA------CUUCCaCUUCUG-CG- -5'
11509 3' -54.7 NC_003085.1 + 27369 0.66 0.723454
Target:  5'- -cAGCGCGUCUggcuGGUGGA-ACGCg -3'
miRNA:   3'- guUCGCGCGGGacuuCCACUUcUGCG- -5'
11509 3' -54.7 NC_003085.1 + 11888 0.66 0.723454
Target:  5'- uGAGCGCGCCgaGuucauGGcc-AGGCGCu -3'
miRNA:   3'- gUUCGCGCGGgaCuu---CCacuUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 17646 0.67 0.623928
Target:  5'- gCAGGCGUgaGCCacgGGAGG--GAGGCGCu -3'
miRNA:   3'- -GUUCGCG--CGGga-CUUCCacUUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 20088 0.67 0.623928
Target:  5'- --cGCGCGCUgUGAcgugccgcAGGUGgcGGgGCu -3'
miRNA:   3'- guuCGCGCGGgACU--------UCCACuuCUgCG- -5'
11509 3' -54.7 NC_003085.1 + 13793 0.67 0.645151
Target:  5'- gCGAGCGUgacGCCagucugcgUGGAGGUGGcgccaugacgugcAGACGCc -3'
miRNA:   3'- -GUUCGCG---CGGg-------ACUUCCACU-------------UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 7605 0.67 0.646268
Target:  5'- ---aCGCGUCCgaUGucGGUGAAGugGUu -3'
miRNA:   3'- guucGCGCGGG--ACuuCCACUUCugCG- -5'
11509 3' -54.7 NC_003085.1 + 13572 0.67 0.646268
Target:  5'- aAGGCGCGCgUgGAcguGGGcaccGGAGGCGCg -3'
miRNA:   3'- gUUCGCGCGgGaCU---UCCa---CUUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 31307 0.67 0.646268
Target:  5'- gCAGGCGCGCCCgacaccGAAGccucaGcAGACGUc -3'
miRNA:   3'- -GUUCGCGCGGGa-----CUUCca---CuUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 42880 0.68 0.579413
Target:  5'- gGGGCGUGUC--GAGGGUGAGGccgagguccuGCGCg -3'
miRNA:   3'- gUUCGCGCGGgaCUUCCACUUC----------UGCG- -5'
11509 3' -54.7 NC_003085.1 + 37150 0.68 0.612763
Target:  5'- -cGGCGgGCacCCUGgcGGUGAcggGGACGa -3'
miRNA:   3'- guUCGCgCG--GGACuuCCACU---UCUGCg -5'
11509 3' -54.7 NC_003085.1 + 21141 0.7 0.482617
Target:  5'- aCAAGgGCGgCCgGAAGGUGGacuGGuACGUg -3'
miRNA:   3'- -GUUCgCGCgGGaCUUCCACU---UC-UGCG- -5'
11509 3' -54.7 NC_003085.1 + 25773 0.7 0.482617
Target:  5'- gCGGGCaaGUCCgacgUGcAGGUGggGACGCc -3'
miRNA:   3'- -GUUCGcgCGGG----ACuUCCACuuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 41456 0.7 0.472317
Target:  5'- -uGGCGCGCaaggCUGGggcgcGGGUGAAGuacCGCg -3'
miRNA:   3'- guUCGCGCGg---GACU-----UCCACUUCu--GCG- -5'
11509 3' -54.7 NC_003085.1 + 14861 0.7 0.462129
Target:  5'- aUAGGCGCGCgCgcAAGGUGAcGGACGa -3'
miRNA:   3'- -GUUCGCGCGgGacUUCCACU-UCUGCg -5'
11509 3' -54.7 NC_003085.1 + 19689 0.66 0.723454
Target:  5'- -uGGCG-GCCCUGGAGGc----GCGCg -3'
miRNA:   3'- guUCGCgCGGGACUUCCacuucUGCG- -5'
11509 3' -54.7 NC_003085.1 + 11301 0.66 0.723454
Target:  5'- gAAGCGCGCgCUGGcgcuuguggacgAGGacugGAAGuccCGCg -3'
miRNA:   3'- gUUCGCGCGgGACU------------UCCa---CUUCu--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.