miRNA display CGI


Results 61 - 80 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11509 3' -54.7 NC_003085.1 + 7914 0.73 0.320319
Target:  5'- gCGAGCGCGUCCUGucGGcgugcaccaacucguUGcGGAUGCg -3'
miRNA:   3'- -GUUCGCGCGGGACuuCC---------------ACuUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 15958 0.68 0.601617
Target:  5'- -uGGCGCuCCCUuggccgcugGGAGGUGggG-CGUg -3'
miRNA:   3'- guUCGCGcGGGA---------CUUCCACuuCuGCG- -5'
11509 3' -54.7 NC_003085.1 + 37150 0.68 0.612763
Target:  5'- -cGGCGgGCacCCUGgcGGUGAcggGGACGa -3'
miRNA:   3'- guUCGCgCG--GGACuuCCACU---UCUGCg -5'
11509 3' -54.7 NC_003085.1 + 17646 0.67 0.623928
Target:  5'- gCAGGCGUgaGCCacgGGAGG--GAGGCGCu -3'
miRNA:   3'- -GUUCGCG--CGGga-CUUCCacUUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 5830 0.66 0.723454
Target:  5'- gAGGCGUcaGCCCUGcAGGUccggGAcugGGACGg -3'
miRNA:   3'- gUUCGCG--CGGGACuUCCA----CU---UCUGCg -5'
11509 3' -54.7 NC_003085.1 + 33082 0.66 0.712614
Target:  5'- cCAGGaCGUGCCCgcGGAGGcucacuccUGGGuGGCGCu -3'
miRNA:   3'- -GUUC-GCGCGGGa-CUUCC--------ACUU-CUGCG- -5'
11509 3' -54.7 NC_003085.1 + 25612 0.66 0.712614
Target:  5'- cCAAGCGCGaCgaGGAGGaGAcgacgaaggccGGGCGCc -3'
miRNA:   3'- -GUUCGCGCgGgaCUUCCaCU-----------UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 32277 0.66 0.700596
Target:  5'- cCAAGCGCGCggaacucCCggcaGAGGUGGuucaGGAgGCa -3'
miRNA:   3'- -GUUCGCGCG-------GGac--UUCCACU----UCUgCG- -5'
11509 3' -54.7 NC_003085.1 + 32637 0.66 0.690701
Target:  5'- uCAAGCGCaGCCUcc-AGGacAAGGCGCa -3'
miRNA:   3'- -GUUCGCG-CGGGacuUCCacUUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 11664 0.66 0.679651
Target:  5'- cCGGGUG-GCCgaGGAGGUGggGcUGUg -3'
miRNA:   3'- -GUUCGCgCGGgaCUUCCACuuCuGCG- -5'
11509 3' -54.7 NC_003085.1 + 47976 0.66 0.679651
Target:  5'- aCGGGcCGCGUCgaGcaagucgcgGAGG-GAGGACGCg -3'
miRNA:   3'- -GUUC-GCGCGGgaC---------UUCCaCUUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 45967 0.66 0.679651
Target:  5'- -cAGCGuCGCCUUGggGcG-GcAGAUGCg -3'
miRNA:   3'- guUCGC-GCGGGACuuC-CaCuUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 38133 0.66 0.679651
Target:  5'- gAGGCucgcCGCCCUGcuggcguuGGUGguGGCGCu -3'
miRNA:   3'- gUUCGc---GCGGGACuu------CCACuuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 705 0.67 0.668555
Target:  5'- uCGGGCGCGgCCUGAgcAGGUccacccGCGCc -3'
miRNA:   3'- -GUUCGCGCgGGACU--UCCAcuuc--UGCG- -5'
11509 3' -54.7 NC_003085.1 + 15778 0.67 0.668555
Target:  5'- uGAGCGCGUcaacgcguuUCUGGAGGccaagUGAAcGCGCu -3'
miRNA:   3'- gUUCGCGCG---------GGACUUCC-----ACUUcUGCG- -5'
11509 3' -54.7 NC_003085.1 + 31307 0.67 0.646268
Target:  5'- gCAGGCGCGCCCgacaccGAAGccucaGcAGACGUc -3'
miRNA:   3'- -GUUCGCGCGGGa-----CUUCca---CuUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 13572 0.67 0.646268
Target:  5'- aAGGCGCGCgUgGAcguGGGcaccGGAGGCGCg -3'
miRNA:   3'- gUUCGCGCGgGaCU---UCCa---CUUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 7605 0.67 0.646268
Target:  5'- ---aCGCGUCCgaUGucGGUGAAGugGUu -3'
miRNA:   3'- guucGCGCGGG--ACuuCCACUUCugCG- -5'
11509 3' -54.7 NC_003085.1 + 13793 0.67 0.645151
Target:  5'- gCGAGCGUgacGCCagucugcgUGGAGGUGGcgccaugacgugcAGACGCc -3'
miRNA:   3'- -GUUCGCG---CGGg-------ACUUCCACU-------------UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 20088 0.67 0.623928
Target:  5'- --cGCGCGCUgUGAcgugccgcAGGUGgcGGgGCu -3'
miRNA:   3'- guuCGCGCGGgACU--------UCCACuuCUgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.