miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11509 5' -59.1 NC_003085.1 + 25531 0.66 0.515938
Target:  5'- -aGCGccCCUCgCUUCGUGAggugucCUUGCUCg -3'
miRNA:   3'- ggCGCa-GGAGgGAGGCGCU------GAACGAG- -5'
11509 5' -59.1 NC_003085.1 + 692 0.66 0.505726
Target:  5'- cCCGCGUCCggCCUCgggCGCGGCcugaGCa- -3'
miRNA:   3'- -GGCGCAGGagGGAG---GCGCUGaa--CGag -5'
11509 5' -59.1 NC_003085.1 + 48510 0.66 0.495601
Target:  5'- gCUGCGaCCUCCUUCUcgGCGGCgaggGCg- -3'
miRNA:   3'- -GGCGCaGGAGGGAGG--CGCUGaa--CGag -5'
11509 5' -59.1 NC_003085.1 + 25408 0.66 0.485569
Target:  5'- gUCGCGUCCggCCCUCaaCGGCaacgGCUg -3'
miRNA:   3'- -GGCGCAGGa-GGGAGgcGCUGaa--CGAg -5'
11509 5' -59.1 NC_003085.1 + 6669 0.66 0.485569
Target:  5'- cUCGUGgacgCCUCCCUgauggCCcuggaGCGGCUUGCg- -3'
miRNA:   3'- -GGCGCa---GGAGGGA-----GG-----CGCUGAACGag -5'
11509 5' -59.1 NC_003085.1 + 30959 0.66 0.475635
Target:  5'- cCCGaGUCCUgCCa--GCGAcCUUGCUCu -3'
miRNA:   3'- -GGCgCAGGAgGGaggCGCU-GAACGAG- -5'
11509 5' -59.1 NC_003085.1 + 28855 0.66 0.475635
Target:  5'- cCCGCG-CCgCCCgacuUCCGCGGCgcUGC-Cg -3'
miRNA:   3'- -GGCGCaGGaGGG----AGGCGCUGa-ACGaG- -5'
11509 5' -59.1 NC_003085.1 + 1297 0.67 0.465803
Target:  5'- gCCGgaGUUCUCCCgcguggCCGCGAag-GCUg -3'
miRNA:   3'- -GGCg-CAGGAGGGa-----GGCGCUgaaCGAg -5'
11509 5' -59.1 NC_003085.1 + 16207 0.67 0.436962
Target:  5'- aCCGCGcUCCUCgccgugcuCCUCauCGCGGCUgGCgUCg -3'
miRNA:   3'- -GGCGC-AGGAG--------GGAG--GCGCUGAaCG-AG- -5'
11509 5' -59.1 NC_003085.1 + 31870 0.67 0.436962
Target:  5'- aUC-CGUCCUCCUacgagcucgUCCGCGAUgccgUGCg- -3'
miRNA:   3'- -GGcGCAGGAGGG---------AGGCGCUGa---ACGag -5'
11509 5' -59.1 NC_003085.1 + 39118 0.67 0.436962
Target:  5'- uCCGCGgugCCUCCCgggagGCGACgugGCg- -3'
miRNA:   3'- -GGCGCa--GGAGGGagg--CGCUGaa-CGag -5'
11509 5' -59.1 NC_003085.1 + 41036 0.67 0.427578
Target:  5'- -gGCGUCCUCCUgg-GCGGCUUgGCg- -3'
miRNA:   3'- ggCGCAGGAGGGaggCGCUGAA-CGag -5'
11509 5' -59.1 NC_003085.1 + 5766 0.67 0.427578
Target:  5'- gCGCaUCC-CCCUUgaGCGGCgcgUGCUCu -3'
miRNA:   3'- gGCGcAGGaGGGAGg-CGCUGa--ACGAG- -5'
11509 5' -59.1 NC_003085.1 + 23585 0.67 0.418315
Target:  5'- gCGCGUCCggcaCggCgGCGAgUUGCUCg -3'
miRNA:   3'- gGCGCAGGag--GgaGgCGCUgAACGAG- -5'
11509 5' -59.1 NC_003085.1 + 21884 0.68 0.409175
Target:  5'- gCCGUGUcCCUCCaggaCUUCGCGGCgcUGCg- -3'
miRNA:   3'- -GGCGCA-GGAGG----GAGGCGCUGa-ACGag -5'
11509 5' -59.1 NC_003085.1 + 5300 0.68 0.391273
Target:  5'- aCCGaagucgCCUCCCUCCGCGAgc-GCg- -3'
miRNA:   3'- -GGCgca---GGAGGGAGGCGCUgaaCGag -5'
11509 5' -59.1 NC_003085.1 + 44239 0.69 0.348815
Target:  5'- gCCGCuUCCUgCCgggCCGCGuCgcGCUCg -3'
miRNA:   3'- -GGCGcAGGAgGGa--GGCGCuGaaCGAG- -5'
11509 5' -59.1 NC_003085.1 + 25809 0.69 0.332776
Target:  5'- gCgGCGUUCg-CCUgCGCGGCcUGCUCg -3'
miRNA:   3'- -GgCGCAGGagGGAgGCGCUGaACGAG- -5'
11509 5' -59.1 NC_003085.1 + 29927 0.69 0.324962
Target:  5'- uCCGCGUCgggcgCCgUCCGCugGGC-UGCUCg -3'
miRNA:   3'- -GGCGCAGga---GGgAGGCG--CUGaACGAG- -5'
11509 5' -59.1 NC_003085.1 + 29867 0.7 0.280957
Target:  5'- uCCGCGUCCUUCC-CUGCcacCUgacGCUCg -3'
miRNA:   3'- -GGCGCAGGAGGGaGGCGcu-GAa--CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.