Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11509 | 5' | -59.1 | NC_003085.1 | + | 29867 | 0.7 | 0.280957 |
Target: 5'- uCCGCGUCCUUCC-CUGCcacCUgacGCUCg -3' miRNA: 3'- -GGCGCAGGAGGGaGGCGcu-GAa--CGAG- -5' |
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11509 | 5' | -59.1 | NC_003085.1 | + | 25809 | 0.69 | 0.332776 |
Target: 5'- gCgGCGUUCg-CCUgCGCGGCcUGCUCg -3' miRNA: 3'- -GgCGCAGGagGGAgGCGCUGaACGAG- -5' |
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11509 | 5' | -59.1 | NC_003085.1 | + | 5300 | 0.68 | 0.391273 |
Target: 5'- aCCGaagucgCCUCCCUCCGCGAgc-GCg- -3' miRNA: 3'- -GGCgca---GGAGGGAGGCGCUgaaCGag -5' |
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11509 | 5' | -59.1 | NC_003085.1 | + | 23585 | 0.67 | 0.418315 |
Target: 5'- gCGCGUCCggcaCggCgGCGAgUUGCUCg -3' miRNA: 3'- gGCGCAGGag--GgaGgCGCUgAACGAG- -5' |
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11509 | 5' | -59.1 | NC_003085.1 | + | 39118 | 0.67 | 0.436962 |
Target: 5'- uCCGCGgugCCUCCCgggagGCGACgugGCg- -3' miRNA: 3'- -GGCGCa--GGAGGGagg--CGCUGaa-CGag -5' |
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11509 | 5' | -59.1 | NC_003085.1 | + | 25531 | 0.66 | 0.515938 |
Target: 5'- -aGCGccCCUCgCUUCGUGAggugucCUUGCUCg -3' miRNA: 3'- ggCGCa-GGAGgGAGGCGCU------GAACGAG- -5' |
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11509 | 5' | -59.1 | NC_003085.1 | + | 29927 | 0.69 | 0.324962 |
Target: 5'- uCCGCGUCgggcgCCgUCCGCugGGC-UGCUCg -3' miRNA: 3'- -GGCGCAGga---GGgAGGCG--CUGaACGAG- -5' |
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11509 | 5' | -59.1 | NC_003085.1 | + | 1472 | 1.11 | 0.000282 |
Target: 5'- gCCGCGUCCUCCCUCCGCGACUUGCUCg -3' miRNA: 3'- -GGCGCAGGAGGGAGGCGCUGAACGAG- -5' |
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11509 | 5' | -59.1 | NC_003085.1 | + | 42135 | 0.76 | 0.105935 |
Target: 5'- cCCGCGUCCUCagccgCCUCCGCGAUg-GCcgUCg -3' miRNA: 3'- -GGCGCAGGAG-----GGAGGCGCUGaaCG--AG- -5' |
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11509 | 5' | -59.1 | NC_003085.1 | + | 10450 | 0.73 | 0.19173 |
Target: 5'- gCCGuCG-CCU-CCUCCGCGACguagcggGCUCg -3' miRNA: 3'- -GGC-GCaGGAgGGAGGCGCUGaa-----CGAG- -5' |
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11509 | 5' | -59.1 | NC_003085.1 | + | 31810 | 0.74 | 0.166684 |
Target: 5'- gCCaGCG-CCUCCCUcCCGUGGCUcacgccugcgcaggUGCUCc -3' miRNA: 3'- -GG-CGCaGGAGGGA-GGCGCUGA--------------ACGAG- -5' |
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11509 | 5' | -59.1 | NC_003085.1 | + | 44239 | 0.69 | 0.348815 |
Target: 5'- gCCGCuUCCUgCCgggCCGCGuCgcGCUCg -3' miRNA: 3'- -GGCGcAGGAgGGa--GGCGCuGaaCGAG- -5' |
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11509 | 5' | -59.1 | NC_003085.1 | + | 41036 | 0.67 | 0.427578 |
Target: 5'- -gGCGUCCUCCUgg-GCGGCUUgGCg- -3' miRNA: 3'- ggCGCAGGAGGGaggCGCUGAA-CGag -5' |
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11509 | 5' | -59.1 | NC_003085.1 | + | 5766 | 0.67 | 0.427578 |
Target: 5'- gCGCaUCC-CCCUUgaGCGGCgcgUGCUCu -3' miRNA: 3'- gGCGcAGGaGGGAGg-CGCUGa--ACGAG- -5' |
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11509 | 5' | -59.1 | NC_003085.1 | + | 692 | 0.66 | 0.505726 |
Target: 5'- cCCGCGUCCggCCUCgggCGCGGCcugaGCa- -3' miRNA: 3'- -GGCGCAGGagGGAG---GCGCUGaa--CGag -5' |
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11509 | 5' | -59.1 | NC_003085.1 | + | 48510 | 0.66 | 0.495601 |
Target: 5'- gCUGCGaCCUCCUUCUcgGCGGCgaggGCg- -3' miRNA: 3'- -GGCGCaGGAGGGAGG--CGCUGaa--CGag -5' |
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11509 | 5' | -59.1 | NC_003085.1 | + | 25408 | 0.66 | 0.485569 |
Target: 5'- gUCGCGUCCggCCCUCaaCGGCaacgGCUg -3' miRNA: 3'- -GGCGCAGGa-GGGAGgcGCUGaa--CGAg -5' |
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11509 | 5' | -59.1 | NC_003085.1 | + | 6669 | 0.66 | 0.485569 |
Target: 5'- cUCGUGgacgCCUCCCUgauggCCcuggaGCGGCUUGCg- -3' miRNA: 3'- -GGCGCa---GGAGGGA-----GG-----CGCUGAACGag -5' |
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11509 | 5' | -59.1 | NC_003085.1 | + | 31870 | 0.67 | 0.436962 |
Target: 5'- aUC-CGUCCUCCUacgagcucgUCCGCGAUgccgUGCg- -3' miRNA: 3'- -GGcGCAGGAGGG---------AGGCGCUGa---ACGag -5' |
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11509 | 5' | -59.1 | NC_003085.1 | + | 28855 | 0.66 | 0.475635 |
Target: 5'- cCCGCG-CCgCCCgacuUCCGCGGCgcUGC-Cg -3' miRNA: 3'- -GGCGCaGGaGGG----AGGCGCUGa-ACGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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