miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11511 3' -55.9 NC_003085.1 + 7546 0.66 0.676751
Target:  5'- cCGAGGGGUGuGaCGUCGACcuugccGCGGccGAGg -3'
miRNA:   3'- -GUUCCCCAUuC-GCGGCUGu-----UGCC--CUC- -5'
11511 3' -55.9 NC_003085.1 + 16592 0.66 0.6371
Target:  5'- aAAGGGugucgguaGUGccgacacccuuccucGGCGCCGucaGCGACGGGAa -3'
miRNA:   3'- gUUCCC--------CAU---------------UCGCGGC---UGUUGCCCUc -5'
11511 3' -55.9 NC_003085.1 + 27300 0.67 0.577647
Target:  5'- -cAGGGGacuGGCGUCGGugaaauCGACGGGGu -3'
miRNA:   3'- guUCCCCau-UCGCGGCU------GUUGCCCUc -5'
11511 3' -55.9 NC_003085.1 + 41892 0.67 0.554807
Target:  5'- uGGGGcgcuuGGgcGGCGCCGACAugcgcgagccuguGCuGGGGGg -3'
miRNA:   3'- gUUCC-----CCauUCGCGGCUGU-------------UG-CCCUC- -5'
11511 3' -55.9 NC_003085.1 + 2485 0.68 0.534374
Target:  5'- cCAGGGugaGGUcAGGCGCCGAacccCAAaGGGAGu -3'
miRNA:   3'- -GUUCC---CCA-UUCGCGGCU----GUUgCCCUC- -5'
11511 3' -55.9 NC_003085.1 + 41922 0.68 0.502685
Target:  5'- gCGAGGuGGaccAGCGCCGG--GCGGGAc -3'
miRNA:   3'- -GUUCC-CCau-UCGCGGCUguUGCCCUc -5'
11511 3' -55.9 NC_003085.1 + 4863 0.69 0.441988
Target:  5'- -cAGGGcGUAcaGGCGUgGuGCAACGGGGGc -3'
miRNA:   3'- guUCCC-CAU--UCGCGgC-UGUUGCCCUC- -5'
11511 3' -55.9 NC_003085.1 + 27634 0.7 0.394713
Target:  5'- -uGGGGGgcu-CGCCGcCAGCGGGAc -3'
miRNA:   3'- guUCCCCauucGCGGCuGUUGCCCUc -5'
11511 3' -55.9 NC_003085.1 + 38244 0.71 0.385657
Target:  5'- -cAGGGGaacaccuGCGCCG-CGGCGGGGa -3'
miRNA:   3'- guUCCCCauu----CGCGGCuGUUGCCCUc -5'
11511 3' -55.9 NC_003085.1 + 21595 0.71 0.367963
Target:  5'- -cAGGGcGUcAGCGCCgcGACGACGGGc- -3'
miRNA:   3'- guUCCC-CAuUCGCGG--CUGUUGCCCuc -5'
11511 3' -55.9 NC_003085.1 + 32068 0.71 0.349993
Target:  5'- cCAAGGGaGgcAGCGCCagccccaGGCGuaACGGGGGc -3'
miRNA:   3'- -GUUCCC-CauUCGCGG-------CUGU--UGCCCUC- -5'
11511 3' -55.9 NC_003085.1 + 17960 0.75 0.205462
Target:  5'- --uGGGGcaccugAAGCGCCGGCAGCGcGGGc -3'
miRNA:   3'- guuCCCCa-----UUCGCGGCUGUUGC-CCUc -5'
11511 3' -55.9 NC_003085.1 + 357 0.97 0.005378
Target:  5'- gCAAGGGaUGAGCGCCGACAACGGGAGg -3'
miRNA:   3'- -GUUCCCcAUUCGCGGCUGUUGCCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.