Results 1 - 20 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11511 | 5' | -59.5 | NC_003085.1 | + | 393 | 1.08 | 0.000356 |
Target: 5'- cCUCUACGGCAAGCGCCUGCGCUCCCUg -3' miRNA: 3'- -GAGAUGCCGUUCGCGGACGCGAGGGA- -5' |
|||||||
11511 | 5' | -59.5 | NC_003085.1 | + | 14272 | 0.66 | 0.449369 |
Target: 5'- --gUGCGGCcaggcugcugccgucAAGCGCC-GCGCagCCCUc -3' miRNA: 3'- gagAUGCCG---------------UUCGCGGaCGCGa-GGGA- -5' |
|||||||
11511 | 5' | -59.5 | NC_003085.1 | + | 28712 | 0.66 | 0.445482 |
Target: 5'- -gCUGCGcGCuGGC-CCUGCGCUUCg- -3' miRNA: 3'- gaGAUGC-CGuUCGcGGACGCGAGGga -5' |
|||||||
11511 | 5' | -59.5 | NC_003085.1 | + | 40320 | 0.67 | 0.389555 |
Target: 5'- cCUCgcCGGCAAGgGCUgGCGCgugCCUc -3' miRNA: 3'- -GAGauGCCGUUCgCGGaCGCGa--GGGa -5' |
|||||||
11511 | 5' | -59.5 | NC_003085.1 | + | 23335 | 0.67 | 0.385993 |
Target: 5'- gCUCUGgcCGGcCAAGCGCCgccggccgccgagGCGCagCCCc -3' miRNA: 3'- -GAGAU--GCC-GUUCGCGGa------------CGCGa-GGGa -5' |
|||||||
11511 | 5' | -59.5 | NC_003085.1 | + | 7779 | 0.67 | 0.371961 |
Target: 5'- aUCgucGCGGCGAGCGCauuCGCggCCCa -3' miRNA: 3'- gAGa--UGCCGUUCGCGgacGCGa-GGGa -5' |
|||||||
11511 | 5' | -59.5 | NC_003085.1 | + | 3574 | 0.67 | 0.371961 |
Target: 5'- ---gGCGGCAAgcGCGCCU-CGCUgCCg -3' miRNA: 3'- gagaUGCCGUU--CGCGGAcGCGAgGGa -5' |
|||||||
11511 | 5' | -59.5 | NC_003085.1 | + | 35787 | 0.67 | 0.360818 |
Target: 5'- ---gACGGCcGGUGUCcuuguccaugggguUGCGCUCCCg -3' miRNA: 3'- gagaUGCCGuUCGCGG--------------ACGCGAGGGa -5' |
|||||||
11511 | 5' | -59.5 | NC_003085.1 | + | 21976 | 0.68 | 0.346601 |
Target: 5'- -gCU-CaGCAGGUGCCcggcaGCGCUCCCUu -3' miRNA: 3'- gaGAuGcCGUUCGCGGa----CGCGAGGGA- -5' |
|||||||
11511 | 5' | -59.5 | NC_003085.1 | + | 12408 | 0.68 | 0.346601 |
Target: 5'- gCUCgaccCGGCGGG-GCCgcUGCGCUCCg- -3' miRNA: 3'- -GAGau--GCCGUUCgCGG--ACGCGAGGga -5' |
|||||||
11511 | 5' | -59.5 | NC_003085.1 | + | 11999 | 0.68 | 0.330396 |
Target: 5'- -cCUGCGGCAgcAGCgGCCUGaCGCUggcgcaCCUg -3' miRNA: 3'- gaGAUGCCGU--UCG-CGGAC-GCGAg-----GGA- -5' |
|||||||
11511 | 5' | -59.5 | NC_003085.1 | + | 25254 | 0.74 | 0.125335 |
Target: 5'- gCUCcGCGGCGGGCGUCgucgucgGCGCgCCCg -3' miRNA: 3'- -GAGaUGCCGUUCGCGGa------CGCGaGGGa -5' |
|||||||
11511 | 5' | -59.5 | NC_003085.1 | + | 30663 | 0.74 | 0.136162 |
Target: 5'- -gCUGCGGCAgGGCGCuCUGCGC-CUCg -3' miRNA: 3'- gaGAUGCCGU-UCGCG-GACGCGaGGGa -5' |
|||||||
11511 | 5' | -59.5 | NC_003085.1 | + | 11776 | 0.72 | 0.178713 |
Target: 5'- --gUACGGC-GGCGCC-GCGCUCCg- -3' miRNA: 3'- gagAUGCCGuUCGCGGaCGCGAGGga -5' |
|||||||
11511 | 5' | -59.5 | NC_003085.1 | + | 14445 | 0.72 | 0.188029 |
Target: 5'- cCUCUACGGCuaucgucGAGCGCUUcGCGgaaUUCCCUc -3' miRNA: 3'- -GAGAUGCCG-------UUCGCGGA-CGC---GAGGGA- -5' |
|||||||
11511 | 5' | -59.5 | NC_003085.1 | + | 41353 | 0.7 | 0.226702 |
Target: 5'- uUCUACGGCAGGCcggGCC-GCGUcaCCCa -3' miRNA: 3'- gAGAUGCCGUUCG---CGGaCGCGa-GGGa -5' |
|||||||
11511 | 5' | -59.5 | NC_003085.1 | + | 46724 | 0.7 | 0.226702 |
Target: 5'- -cCUugGGC-AGCGCCUucgcgcGCGCUgCCa -3' miRNA: 3'- gaGAugCCGuUCGCGGA------CGCGAgGGa -5' |
|||||||
11511 | 5' | -59.5 | NC_003085.1 | + | 48484 | 0.69 | 0.264454 |
Target: 5'- gCUCcuCGGCAAGCGCCUcguugaGCGCUgcgaCCUc -3' miRNA: 3'- -GAGauGCCGUUCGCGGA------CGCGAg---GGA- -5' |
|||||||
11511 | 5' | -59.5 | NC_003085.1 | + | 4165 | 0.74 | 0.125335 |
Target: 5'- aCUCcaGCGGCGAGUGCggGCGCUCCa- -3' miRNA: 3'- -GAGa-UGCCGUUCGCGgaCGCGAGGga -5' |
|||||||
11511 | 5' | -59.5 | NC_003085.1 | + | 12584 | 0.66 | 0.435848 |
Target: 5'- uUCUgGCGGUggAGGCuGCUguaGUGCUCCCUc -3' miRNA: 3'- gAGA-UGCCG--UUCG-CGGa--CGCGAGGGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home