miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11513 3' -51.3 NC_003085.1 + 7579 0.69 0.76075
Target:  5'- cGGUGAuguccuGCAAccgcucgacgcGGACgCCCGUCACCuccagcguGAGGc -3'
miRNA:   3'- -CCACU------UGUU-----------CCUG-GGGUAGUGG--------UUCC- -5'
11513 3' -51.3 NC_003085.1 + 47383 0.69 0.750177
Target:  5'- uGGaGAugGuGGACaaCGUCGCCAAGGc -3'
miRNA:   3'- -CCaCUugUuCCUGggGUAGUGGUUCC- -5'
11513 3' -51.3 NC_003085.1 + 34875 0.69 0.739479
Target:  5'- cGGUGAAUGA-GACCCgCGucacauUCACCGAGa -3'
miRNA:   3'- -CCACUUGUUcCUGGG-GU------AGUGGUUCc -5'
11513 3' -51.3 NC_003085.1 + 11795 0.69 0.739479
Target:  5'- --cGGGCGugucGGcuGCCCCAUCGCCGGGu -3'
miRNA:   3'- ccaCUUGUu---CC--UGGGGUAGUGGUUCc -5'
11513 3' -51.3 NC_003085.1 + 7708 0.69 0.727579
Target:  5'- gGGUGAcgucaugaagccAUGucccucguuccccGGGuACUCCGUCACCGAGGa -3'
miRNA:   3'- -CCACU------------UGU-------------UCC-UGGGGUAGUGGUUCC- -5'
11513 3' -51.3 NC_003085.1 + 19395 0.7 0.695668
Target:  5'- cGUuGACAuAGGcCCCCGUCAacuCCAGGGa -3'
miRNA:   3'- cCAcUUGU-UCCuGGGGUAGU---GGUUCC- -5'
11513 3' -51.3 NC_003085.1 + 16935 0.7 0.684523
Target:  5'- uGGaGGGCAAGG-CCCCGcaCACCuGGGa -3'
miRNA:   3'- -CCaCUUGUUCCuGGGGUa-GUGGuUCC- -5'
11513 3' -51.3 NC_003085.1 + 33777 0.7 0.673325
Target:  5'- cGGUuGACGGGcACUCCAggGCCAAGGg -3'
miRNA:   3'- -CCAcUUGUUCcUGGGGUagUGGUUCC- -5'
11513 3' -51.3 NC_003085.1 + 27742 0.71 0.650819
Target:  5'- aGGUGGACAAGGACacguaCGUCacgGCCAAa- -3'
miRNA:   3'- -CCACUUGUUCCUGgg---GUAG---UGGUUcc -5'
11513 3' -51.3 NC_003085.1 + 33614 0.71 0.650819
Target:  5'- --cGAACccucaucauGGACCUCGUCGCCAAGcGg -3'
miRNA:   3'- ccaCUUGuu-------CCUGGGGUAGUGGUUC-C- -5'
11513 3' -51.3 NC_003085.1 + 37950 0.71 0.62824
Target:  5'- --aGAAUcGGGGCCCCAaCGCCAucuGGu -3'
miRNA:   3'- ccaCUUGuUCCUGGGGUaGUGGUu--CC- -5'
11513 3' -51.3 NC_003085.1 + 46457 0.71 0.62824
Target:  5'- --cGAGCAcccaGAgUCCAUCACCAAGGg -3'
miRNA:   3'- ccaCUUGUuc--CUgGGGUAGUGGUUCC- -5'
11513 3' -51.3 NC_003085.1 + 35142 0.71 0.62824
Target:  5'- --gGGGCAgacccgcuAGGGCCCCAacUC-CCAGGGg -3'
miRNA:   3'- ccaCUUGU--------UCCUGGGGU--AGuGGUUCC- -5'
11513 3' -51.3 NC_003085.1 + 31686 0.73 0.517094
Target:  5'- --cGGGCGGGGGCCCUuggcuUCGCuCAGGGu -3'
miRNA:   3'- ccaCUUGUUCCUGGGGu----AGUG-GUUCC- -5'
11513 3' -51.3 NC_003085.1 + 37239 0.74 0.485154
Target:  5'- cGUGAAgGAGcucguCCCCGUCACCGccAGGg -3'
miRNA:   3'- cCACUUgUUCcu---GGGGUAGUGGU--UCC- -5'
11513 3' -51.3 NC_003085.1 + 39731 0.74 0.474715
Target:  5'- aGGUGGAUGAGGACCag--CGCCGgaAGGa -3'
miRNA:   3'- -CCACUUGUUCCUGGgguaGUGGU--UCC- -5'
11513 3' -51.3 NC_003085.1 + 49186 0.81 0.20284
Target:  5'- -cUGAGCAccGGGGCCCCGUCAgcaCGAGGg -3'
miRNA:   3'- ccACUUGU--UCCUGGGGUAGUg--GUUCC- -5'
11513 3' -51.3 NC_003085.1 + 1206 1.14 0.001119
Target:  5'- aGGUGAACAAGGACCCCAUCACCAAGGa -3'
miRNA:   3'- -CCACUUGUUCCUGGGGUAGUGGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.