miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11514 5' -54.5 NC_003085.1 + 6991 0.66 0.793423
Target:  5'- cGGGAUGcGGUGgaccAUGAGcgggaAGCGgUCGGg -3'
miRNA:   3'- -CCCUGCuCCACa---UACUC-----UCGCaGGCC- -5'
11514 5' -54.5 NC_003085.1 + 32140 0.66 0.793423
Target:  5'- gGGGGCGGcuGGUGgcgcgGUGGGuuacGGCGUCgGc -3'
miRNA:   3'- -CCCUGCU--CCACa----UACUC----UCGCAGgCc -5'
11514 5' -54.5 NC_003085.1 + 33909 0.66 0.763646
Target:  5'- uGGGCc-GGUGgccgggcgGAGAGCGUCCa- -3'
miRNA:   3'- cCCUGcuCCACaua-----CUCUCGCAGGcc -5'
11514 5' -54.5 NC_003085.1 + 10435 0.66 0.753438
Target:  5'- --aGCGGGGU-UGaGGGAGCGUCCGcGg -3'
miRNA:   3'- cccUGCUCCAcAUaCUCUCGCAGGC-C- -5'
11514 5' -54.5 NC_003085.1 + 40340 0.66 0.743108
Target:  5'- -aGACGAGGuUGUAgGGGGGCGggacguaggccCCGGc -3'
miRNA:   3'- ccCUGCUCC-ACAUaCUCUCGCa----------GGCC- -5'
11514 5' -54.5 NC_003085.1 + 17867 0.67 0.732667
Target:  5'- cGGGGCGGgcGGUGgAUGuGGGGUGUCaugagCGGg -3'
miRNA:   3'- -CCCUGCU--CCACaUAC-UCUCGCAG-----GCC- -5'
11514 5' -54.5 NC_003085.1 + 743 0.67 0.700791
Target:  5'- cGGGAC-AGGUGgccgGcGA-CGUCCGGg -3'
miRNA:   3'- -CCCUGcUCCACaua-CuCUcGCAGGCC- -5'
11514 5' -54.5 NC_003085.1 + 33539 0.68 0.679192
Target:  5'- uGGcGACGAGGUccAUGAuGAGgGUUCGa -3'
miRNA:   3'- -CC-CUGCUCCAcaUACU-CUCgCAGGCc -5'
11514 5' -54.5 NC_003085.1 + 7090 0.68 0.679192
Target:  5'- --cGCGAGGgccuUGAGGGCG-CCGGu -3'
miRNA:   3'- cccUGCUCCacauACUCUCGCaGGCC- -5'
11514 5' -54.5 NC_003085.1 + 43667 0.69 0.591846
Target:  5'- gGGGGCGGGGUugcagcgGAGAcgggcagauGCGUCCGc -3'
miRNA:   3'- -CCCUGCUCCAcaua---CUCU---------CGCAGGCc -5'
11514 5' -54.5 NC_003085.1 + 21116 0.69 0.591846
Target:  5'- aGGGCgGAGGUGUggGAaauaugggacaaGGGCGgCCGGa -3'
miRNA:   3'- cCCUG-CUCCACAuaCU------------CUCGCaGGCC- -5'
11514 5' -54.5 NC_003085.1 + 3315 0.69 0.580983
Target:  5'- cGGGCGA-GUGUGUGGGccggcccagguAGCG-CCGGc -3'
miRNA:   3'- cCCUGCUcCACAUACUC-----------UCGCaGGCC- -5'
11514 5' -54.5 NC_003085.1 + 1391 1.13 0.00071
Target:  5'- uGGGACGAGGUGUAUGAGAGCGUCCGGa -3'
miRNA:   3'- -CCCUGCUCCACAUACUCUCGCAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.