miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11515 3' -56.3 NC_003085.1 + 8837 0.66 0.655147
Target:  5'- gGCUgCG-CGAgcAGGaGGGGCGgcCAUGACGu -3'
miRNA:   3'- -CGAgGCuGCU--UCC-CCUCGC--GUACUGU- -5'
11515 3' -56.3 NC_003085.1 + 18446 0.66 0.644161
Target:  5'- cGCgUCGugGAcguccuGGaGGAGCGCGUGGa- -3'
miRNA:   3'- -CGaGGCugCUu-----CC-CCUCGCGUACUgu -5'
11515 3' -56.3 NC_003085.1 + 36825 0.66 0.622167
Target:  5'- gGCgaggCCGGCGGccgAGGGGAgguaGCGCAUa--- -3'
miRNA:   3'- -CGa---GGCUGCU---UCCCCU----CGCGUAcugu -5'
11515 3' -56.3 NC_003085.1 + 36484 0.66 0.618869
Target:  5'- gGCUCCGuGCGGAGGGuGAcuuuccgucGUccacccuggaggucGCAUGACGa -3'
miRNA:   3'- -CGAGGC-UGCUUCCC-CU---------CG--------------CGUACUGU- -5'
11515 3' -56.3 NC_003085.1 + 36443 0.67 0.589264
Target:  5'- --aCCGuGCGGAGGGcGGCGCcucAUGGCGa -3'
miRNA:   3'- cgaGGC-UGCUUCCCcUCGCG---UACUGU- -5'
11515 3' -56.3 NC_003085.1 + 14392 0.67 0.545932
Target:  5'- gGC-CCGGgaGAGGcGGGAGCGCAUcGCc -3'
miRNA:   3'- -CGaGGCUg-CUUC-CCCUCGCGUAcUGu -5'
11515 3' -56.3 NC_003085.1 + 3425 0.67 0.545932
Target:  5'- gGCUCacgGGCGucGGGGAGCGuCGUcugugcGGCGa -3'
miRNA:   3'- -CGAGg--CUGCuuCCCCUCGC-GUA------CUGU- -5'
11515 3' -56.3 NC_003085.1 + 38175 0.68 0.514112
Target:  5'- cCUCCGAgaCGAuGGuGGcGGCGCcgGACAc -3'
miRNA:   3'- cGAGGCU--GCUuCC-CC-UCGCGuaCUGU- -5'
11515 3' -56.3 NC_003085.1 + 13939 0.69 0.472929
Target:  5'- cGCgcgCCGAagaaGAAGcGGAGCGUcgGACu -3'
miRNA:   3'- -CGa--GGCUg---CUUCcCCUCGCGuaCUGu -5'
11515 3' -56.3 NC_003085.1 + 38855 0.7 0.396002
Target:  5'- cGCagCGACGAGGGcGAGCGCAaucacggagGGCAc -3'
miRNA:   3'- -CGagGCUGCUUCCcCUCGCGUa--------CUGU- -5'
11515 3' -56.3 NC_003085.1 + 5865 0.72 0.304328
Target:  5'- cGCUCCGACGAAGGccacGGCGUAgaGCAc -3'
miRNA:   3'- -CGAGGCUGCUUCCcc--UCGCGUacUGU- -5'
11515 3' -56.3 NC_003085.1 + 45364 0.74 0.223906
Target:  5'- cCUCCGACGAAGGaccGGAcGgGUGUGACGg -3'
miRNA:   3'- cGAGGCUGCUUCC---CCU-CgCGUACUGU- -5'
11515 3' -56.3 NC_003085.1 + 1447 1.1 0.000622
Target:  5'- uGCUCCGACGAAGGGGAGCGCAUGACAc -3'
miRNA:   3'- -CGAGGCUGCUUCCCCUCGCGUACUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.