Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11515 | 5' | -62.4 | NC_003085.1 | + | 32995 | 0.66 | 0.394571 |
Target: 5'- gCCgGUCGCCGUUGCCGcauucgcgacGUCgaaggcggaCGGCCc -3' miRNA: 3'- -GGgCAGUGGCAGCGGU----------CGGa--------GCCGGc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 32561 | 0.69 | 0.2539 |
Target: 5'- cUCCGUCAggUCGa-GCUucuuGGCCUCGGCCa -3' miRNA: 3'- -GGGCAGU--GGCagCGG----UCGGAGCCGGc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 27616 | 0.69 | 0.224464 |
Target: 5'- -aCGUCACCGcCGCCGGagaUGGCCa -3' miRNA: 3'- ggGCAGUGGCaGCGGUCggaGCCGGc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 25863 | 0.66 | 0.353074 |
Target: 5'- aUCGUCACCGUCGagCAacucGCCgcCGuGCCGg -3' miRNA: 3'- gGGCAGUGGCAGCg-GU----CGGa-GC-CGGC- -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 25424 | 0.7 | 0.218937 |
Target: 5'- gCCCGUCACCGUccggaagcgcgCGCCAuccaccuuGUCggUGGCCa -3' miRNA: 3'- -GGGCAGUGGCA-----------GCGGU--------CGGa-GCCGGc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 24414 | 0.72 | 0.151912 |
Target: 5'- uCCCGUCGCCGUagagCGCCgcggagaugucguuGGCCauggUGGCCu -3' miRNA: 3'- -GGGCAGUGGCA----GCGG--------------UCGGa---GCCGGc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 23817 | 0.68 | 0.293322 |
Target: 5'- gUCCGcagCACCGaaGUCagcgagAGCCUCGGCCc -3' miRNA: 3'- -GGGCa--GUGGCagCGG------UCGGAGCCGGc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 23007 | 0.79 | 0.041745 |
Target: 5'- gCCGUCGCCGUCGaCgCGGCCUCGGagggcuucgccCCGg -3' miRNA: 3'- gGGCAGUGGCAGC-G-GUCGGAGCC-----------GGC- -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 22851 | 0.7 | 0.218937 |
Target: 5'- gCCGUUgccgcuGCCGUCGCCA-CCgCGGCgGg -3' miRNA: 3'- gGGCAG------UGGCAGCGGUcGGaGCCGgC- -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 18486 | 0.68 | 0.293322 |
Target: 5'- cCCUGUCgGCCaGUCGCUucGCCUCGGg-- -3' miRNA: 3'- -GGGCAG-UGG-CAGCGGu-CGGAGCCggc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 17056 | 0.7 | 0.193019 |
Target: 5'- gCCGUCGgCGUCGCgGGCC-CGGagCGu -3' miRNA: 3'- gGGCAGUgGCAGCGgUCGGaGCCg-GC- -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 16493 | 0.67 | 0.314027 |
Target: 5'- uCCCGUCGCUGacggCGCCgaggaagGGUgUCGGCa- -3' miRNA: 3'- -GGGCAGUGGCa---GCGG-------UCGgAGCCGgc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 15185 | 0.68 | 0.273041 |
Target: 5'- gCCCGgcugaGCCGgugCGCCAGCgC-CGcGCCGc -3' miRNA: 3'- -GGGCag---UGGCa--GCGGUCG-GaGC-CGGC- -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 14786 | 0.67 | 0.307485 |
Target: 5'- -aCGUCcCUGUCggGCUGGCCuUCGGCCu -3' miRNA: 3'- ggGCAGuGGCAG--CGGUCGG-AGCCGGc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 14114 | 0.66 | 0.386023 |
Target: 5'- -aCGgacaCGCCGUCGCgCAGUagCUCGGCa- -3' miRNA: 3'- ggGCa---GUGGCAGCG-GUCG--GAGCCGgc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 12639 | 0.74 | 0.114562 |
Target: 5'- gCgGUcCACCGUC-CCAGCC-CGGCCa -3' miRNA: 3'- gGgCA-GUGGCAGcGGUCGGaGCCGGc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 12097 | 0.67 | 0.300339 |
Target: 5'- gUCGcgcagCACCGgcaggugCGCCAGCgUCaGGCCGc -3' miRNA: 3'- gGGCa----GUGGCa------GCGGUCGgAG-CCGGC- -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 11114 | 0.71 | 0.169829 |
Target: 5'- gCCCGUCACaaGUCcggGCCuGUCUCGGCgGu -3' miRNA: 3'- -GGGCAGUGg-CAG---CGGuCGGAGCCGgC- -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 10789 | 0.72 | 0.15714 |
Target: 5'- gUCCGcUUGCCGUCaGCCAguGCCUCgcgGGCCGc -3' miRNA: 3'- -GGGC-AGUGGCAG-CGGU--CGGAG---CCGGC- -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 9764 | 0.66 | 0.386872 |
Target: 5'- cUCCaGUCugCaGggaCGCCAGCCggugcucgacguuggCGGCCGu -3' miRNA: 3'- -GGG-CAGugG-Ca--GCGGUCGGa--------------GCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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