Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11515 | 5' | -62.4 | NC_003085.1 | + | 5382 | 0.76 | 0.072403 |
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Target: 5'- uCCCGUCACCGUCGa-GGCCUacGCCGc -3' miRNA: 3'- -GGGCAGUGGCAGCggUCGGAgcCGGC- -5' |
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| 11515 | 5' | -62.4 | NC_003085.1 | + | 4432 | 0.66 | 0.345154 |
|
Target: 5'- gCCCGacggugcuccUCACCGUCGCCG---UCGGCg- -3' miRNA: 3'- -GGGC----------AGUGGCAGCGGUcggAGCCGgc -5' |
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| 11515 | 5' | -62.4 | NC_003085.1 | + | 2296 | 0.66 | 0.394571 |
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Target: 5'- cUCCGgcagCACgG-CGCUGGCCUgccucgccacCGGCCGc -3' miRNA: 3'- -GGGCa---GUGgCaGCGGUCGGA----------GCCGGC- -5' |
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| 11515 | 5' | -62.4 | NC_003085.1 | + | 2138 | 0.73 | 0.134306 |
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Target: 5'- uCgCGUCACCGUC-CgGGCCUUGGCa- -3' miRNA: 3'- -GgGCAGUGGCAGcGgUCGGAGCCGgc -5' |
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| 11515 | 5' | -62.4 | NC_003085.1 | + | 1486 | 1.1 | 0.00019 |
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Target: 5'- gCCCGUCACCGUCGCCAGCCUCGGCCGg -3' miRNA: 3'- -GGGCAGUGGCAGCGGUCGGAGCCGGC- -5' |
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| 11515 | 5' | -62.4 | NC_003085.1 | + | 1404 | 0.68 | 0.293322 |
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Target: 5'- gUCCGUacuccagcgcCAUCGcagUGCCAGCCUucgCGGCCa -3' miRNA: 3'- -GGGCA----------GUGGCa--GCGGUCGGA---GCCGGc -5' |
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| 11515 | 5' | -62.4 | NC_003085.1 | + | 686 | 0.75 | 0.094964 |
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Target: 5'- aCCUGUC-CCG-CGuCCGGCCUCGGgCGc -3' miRNA: 3'- -GGGCAGuGGCaGC-GGUCGGAGCCgGC- -5' |
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| 11515 | 5' | -62.4 | NC_003085.1 | + | 407 | 0.72 | 0.149163 |
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Target: 5'- gCCUG-CGCUcccugGaCGCCAGUCUCGGCCGc -3' miRNA: 3'- -GGGCaGUGG-----CaGCGGUCGGAGCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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