miRNA display CGI


Results 21 - 40 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11515 5' -62.4 NC_003085.1 + 23817 0.68 0.293322
Target:  5'- gUCCGcagCACCGaaGUCagcgagAGCCUCGGCCc -3'
miRNA:   3'- -GGGCa--GUGGCagCGG------UCGGAGCCGGc -5'
11515 5' -62.4 NC_003085.1 + 42269 0.68 0.273041
Target:  5'- cCCUGUCGCCcagCGCCucauGCCgaGGCUGg -3'
miRNA:   3'- -GGGCAGUGGca-GCGGu---CGGagCCGGC- -5'
11515 5' -62.4 NC_003085.1 + 15185 0.68 0.273041
Target:  5'- gCCCGgcugaGCCGgugCGCCAGCgC-CGcGCCGc -3'
miRNA:   3'- -GGGCag---UGGCa--GCGGUCG-GaGC-CGGC- -5'
11515 5' -62.4 NC_003085.1 + 48100 0.69 0.2539
Target:  5'- gCCCGUCGCUGUCGUa---CUUGGCgGc -3'
miRNA:   3'- -GGGCAGUGGCAGCGgucgGAGCCGgC- -5'
11515 5' -62.4 NC_003085.1 + 40902 0.69 0.2539
Target:  5'- gCCCGgcCGCCGUCagguacagGCCGGCCgggacgcgcgUGGCCu -3'
miRNA:   3'- -GGGCa-GUGGCAG--------CGGUCGGa---------GCCGGc -5'
11515 5' -62.4 NC_003085.1 + 32561 0.69 0.2539
Target:  5'- cUCCGUCAggUCGa-GCUucuuGGCCUCGGCCa -3'
miRNA:   3'- -GGGCAGU--GGCagCGG----UCGGAGCCGGc -5'
11515 5' -62.4 NC_003085.1 + 27616 0.69 0.224464
Target:  5'- -aCGUCACCGcCGCCGGagaUGGCCa -3'
miRNA:   3'- ggGCAGUGGCaGCGGUCggaGCCGGc -5'
11515 5' -62.4 NC_003085.1 + 25424 0.7 0.218937
Target:  5'- gCCCGUCACCGUccggaagcgcgCGCCAuccaccuuGUCggUGGCCa -3'
miRNA:   3'- -GGGCAGUGGCA-----------GCGGU--------CGGa-GCCGGc -5'
11515 5' -62.4 NC_003085.1 + 22851 0.7 0.218937
Target:  5'- gCCGUUgccgcuGCCGUCGCCA-CCgCGGCgGg -3'
miRNA:   3'- gGGCAG------UGGCAGCGGUcGGaGCCGgC- -5'
11515 5' -62.4 NC_003085.1 + 17056 0.7 0.193019
Target:  5'- gCCGUCGgCGUCGCgGGCC-CGGagCGu -3'
miRNA:   3'- gGGCAGUgGCAGCGgUCGGaGCCg-GC- -5'
11515 5' -62.4 NC_003085.1 + 41288 0.71 0.174258
Target:  5'- -aCGUCACCGU-GCCAgagcaguccaacGCCUCGGgCGu -3'
miRNA:   3'- ggGCAGUGGCAgCGGU------------CGGAGCCgGC- -5'
11515 5' -62.4 NC_003085.1 + 42967 0.71 0.174258
Target:  5'- uCCCGcaUCAuCCGUgaCGCUGGCCacuucaUCGGCCGa -3'
miRNA:   3'- -GGGC--AGU-GGCA--GCGGUCGG------AGCCGGC- -5'
11515 5' -62.4 NC_003085.1 + 11114 0.71 0.169829
Target:  5'- gCCCGUCACaaGUCcggGCCuGUCUCGGCgGu -3'
miRNA:   3'- -GGGCAGUGg-CAG---CGGuCGGAGCCGgC- -5'
11515 5' -62.4 NC_003085.1 + 10789 0.72 0.15714
Target:  5'- gUCCGcUUGCCGUCaGCCAguGCCUCgcgGGCCGc -3'
miRNA:   3'- -GGGC-AGUGGCAG-CGGU--CGGAG---CCGGC- -5'
11515 5' -62.4 NC_003085.1 + 24414 0.72 0.151912
Target:  5'- uCCCGUCGCCGUagagCGCCgcggagaugucguuGGCCauggUGGCCu -3'
miRNA:   3'- -GGGCAGUGGCA----GCGG--------------UCGGa---GCCGGc -5'
11515 5' -62.4 NC_003085.1 + 407 0.72 0.149163
Target:  5'- gCCUG-CGCUcccugGaCGCCAGUCUCGGCCGc -3'
miRNA:   3'- -GGGCaGUGG-----CaGCGGUCGGAGCCGGC- -5'
11515 5' -62.4 NC_003085.1 + 2138 0.73 0.134306
Target:  5'- uCgCGUCACCGUC-CgGGCCUUGGCa- -3'
miRNA:   3'- -GgGCAGUGGCAGcGgUCGGAGCCGgc -5'
11515 5' -62.4 NC_003085.1 + 48902 0.73 0.124071
Target:  5'- gCCCGcCAgCCG-CGCC-GCCUCGcGCCGu -3'
miRNA:   3'- -GGGCaGU-GGCaGCGGuCGGAGC-CGGC- -5'
11515 5' -62.4 NC_003085.1 + 12639 0.74 0.114562
Target:  5'- gCgGUcCACCGUC-CCAGCC-CGGCCa -3'
miRNA:   3'- gGgCA-GUGGCAGcGGUCGGaGCCGGc -5'
11515 5' -62.4 NC_003085.1 + 45662 0.74 0.102942
Target:  5'- gCCCaG-CACCGUCGCC-GCUUCGGCg- -3'
miRNA:   3'- -GGG-CaGUGGCAGCGGuCGGAGCCGgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.