Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11516 | 3' | -58.6 | NC_003085.1 | + | 756 | 0.71 | 0.260716 |
Target: 5'- gCCGgaGUuCGUCGCC-GCAGUugcuUGCGGCc -3' miRNA: 3'- -GGCa-CGcGCAGCGGaCGUCA----ACGCCG- -5' |
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11516 | 3' | -58.6 | NC_003085.1 | + | 1561 | 1.13 | 0.000217 |
Target: 5'- gCCGUGCGCGUCGCCUGCAGUUGCGGCg -3' miRNA: 3'- -GGCACGCGCAGCGGACGUCAACGCCG- -5' |
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11516 | 3' | -58.6 | NC_003085.1 | + | 2652 | 0.7 | 0.302413 |
Target: 5'- uCCGUGacCGCGUCGauggcGUAGggUGCGGCa -3' miRNA: 3'- -GGCAC--GCGCAGCgga--CGUCa-ACGCCG- -5' |
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11516 | 3' | -58.6 | NC_003085.1 | + | 8571 | 0.72 | 0.227305 |
Target: 5'- -gGUGCGCGUCGUacugGCGGgccagcgccucgGCGGCc -3' miRNA: 3'- ggCACGCGCAGCGga--CGUCaa----------CGCCG- -5' |
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11516 | 3' | -58.6 | NC_003085.1 | + | 12296 | 0.69 | 0.374237 |
Target: 5'- aCG-GCGCgGUgGUCcGCugGGUUGCGGCg -3' miRNA: 3'- gGCaCGCG-CAgCGGaCG--UCAACGCCG- -5' |
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11516 | 3' | -58.6 | NC_003085.1 | + | 15205 | 0.69 | 0.340941 |
Target: 5'- cUCGUGCuCGUCGCaccacGCGGc-GCGGCg -3' miRNA: 3'- -GGCACGcGCAGCGga---CGUCaaCGCCG- -5' |
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11516 | 3' | -58.6 | NC_003085.1 | + | 15772 | 0.7 | 0.309842 |
Target: 5'- gUCGUugaGCGUGUCGCCcaugUGCuccaugGCGGCa -3' miRNA: 3'- -GGCA---CGCGCAGCGG----ACGucaa--CGCCG- -5' |
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11516 | 3' | -58.6 | NC_003085.1 | + | 20653 | 0.68 | 0.427214 |
Target: 5'- aCGUGgcuCGCGUCGCgucggagUUGCuGgaGCGGCu -3' miRNA: 3'- gGCAC---GCGCAGCG-------GACGuCaaCGCCG- -5' |
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11516 | 3' | -58.6 | NC_003085.1 | + | 20944 | 0.69 | 0.349061 |
Target: 5'- gCCccGCGCG-CGUCUGCAcgaggUGCGGUg -3' miRNA: 3'- -GGcaCGCGCaGCGGACGUca---ACGCCG- -5' |
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11516 | 3' | -58.6 | NC_003085.1 | + | 22881 | 0.7 | 0.295121 |
Target: 5'- gUCGggGC-CGUCGCCUccuggGCGGgaGCGGCc -3' miRNA: 3'- -GGCa-CGcGCAGCGGA-----CGUCaaCGCCG- -5' |
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11516 | 3' | -58.6 | NC_003085.1 | + | 23004 | 0.71 | 0.28095 |
Target: 5'- -gGUGCGCG-CGCC-GCAGUccUGGCg -3' miRNA: 3'- ggCACGCGCaGCGGaCGUCAacGCCG- -5' |
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11516 | 3' | -58.6 | NC_003085.1 | + | 23322 | 0.68 | 0.400616 |
Target: 5'- uUGUGCGCGggCGgC-GCGGUgcgaagcGCGGCg -3' miRNA: 3'- gGCACGCGCa-GCgGaCGUCAa------CGCCG- -5' |
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11516 | 3' | -58.6 | NC_003085.1 | + | 23746 | 0.67 | 0.466538 |
Target: 5'- cCCGcUGCGUGgaCGCCUGg----GCGGCg -3' miRNA: 3'- -GGC-ACGCGCa-GCGGACgucaaCGCCG- -5' |
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11516 | 3' | -58.6 | NC_003085.1 | + | 25163 | 0.7 | 0.302412 |
Target: 5'- gCCG-GCGacCGUgGCCUGguGgcgGUGGCg -3' miRNA: 3'- -GGCaCGC--GCAgCGGACguCaa-CGCCG- -5' |
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11516 | 3' | -58.6 | NC_003085.1 | + | 25572 | 0.66 | 0.54812 |
Target: 5'- gCGgGCGCGgacCGCCuuuucgUGCAGUU-UGGCa -3' miRNA: 3'- gGCaCGCGCa--GCGG------ACGUCAAcGCCG- -5' |
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11516 | 3' | -58.6 | NC_003085.1 | + | 26708 | 0.68 | 0.391692 |
Target: 5'- cUCGaGCGCG-CGCaggGCGGUgacggcGCGGCg -3' miRNA: 3'- -GGCaCGCGCaGCGga-CGUCAa-----CGCCG- -5' |
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11516 | 3' | -58.6 | NC_003085.1 | + | 27739 | 0.66 | 0.506631 |
Target: 5'- ---aGCaCGUCGCCgccGUAGUcgguggcgaUGCGGCg -3' miRNA: 3'- ggcaCGcGCAGCGGa--CGUCA---------ACGCCG- -5' |
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11516 | 3' | -58.6 | NC_003085.1 | + | 28112 | 0.7 | 0.295121 |
Target: 5'- ---aGCGCG-CGCCagaagcaggUGCAGUugcUGCGGCc -3' miRNA: 3'- ggcaCGCGCaGCGG---------ACGUCA---ACGCCG- -5' |
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11516 | 3' | -58.6 | NC_003085.1 | + | 29222 | 0.72 | 0.241684 |
Target: 5'- ---cGCGaCGUCGCCUGCgAGUagGCGGa -3' miRNA: 3'- ggcaCGC-GCAGCGGACG-UCAa-CGCCg -5' |
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11516 | 3' | -58.6 | NC_003085.1 | + | 30889 | 0.67 | 0.486388 |
Target: 5'- --uUGCcuUGUCGCCcGCGGUgauugcUGCGGCg -3' miRNA: 3'- ggcACGc-GCAGCGGaCGUCA------ACGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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