miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11517 3' -57.7 NC_003085.1 + 22846 0.66 0.545097
Target:  5'- uGCcgCUGccGUCGcCACCGCggcggGCGUCGUCg -3'
miRNA:   3'- -UGa-GACa-CGGC-GUGGCGa----UGCGGUAG- -5'
11517 3' -57.7 NC_003085.1 + 5635 0.66 0.545097
Target:  5'- ----cGUGgCGCACCGUcgcgGCGCCAg- -3'
miRNA:   3'- ugagaCACgGCGUGGCGa---UGCGGUag -5'
11517 3' -57.7 NC_003085.1 + 16579 0.66 0.534374
Target:  5'- ----aGUGCCGaCACC-CUuccucgGCGCCGUCa -3'
miRNA:   3'- ugagaCACGGC-GUGGcGA------UGCGGUAG- -5'
11517 3' -57.7 NC_003085.1 + 7303 0.66 0.492303
Target:  5'- --gCUGU-CCguagggGCAgCGCUGCGCCAUCc -3'
miRNA:   3'- ugaGACAcGG------CGUgGCGAUGCGGUAG- -5'
11517 3' -57.7 NC_003085.1 + 10647 0.66 0.492303
Target:  5'- cCUC-GUGCUGCGcCCGCUccuucgccucuuGCGCCGc- -3'
miRNA:   3'- uGAGaCACGGCGU-GGCGA------------UGCGGUag -5'
11517 3' -57.7 NC_003085.1 + 19097 0.67 0.461776
Target:  5'- ---gUGcGCCGCAcCCGCUuCGCUGUCa -3'
miRNA:   3'- ugagACaCGGCGU-GGCGAuGCGGUAG- -5'
11517 3' -57.7 NC_003085.1 + 39716 0.67 0.451823
Target:  5'- cGCUCgGUGUCGuCGCgaaGUUGCGCCAc- -3'
miRNA:   3'- -UGAGaCACGGC-GUGg--CGAUGCGGUag -5'
11517 3' -57.7 NC_003085.1 + 7264 0.67 0.450834
Target:  5'- gGCUCUgggugaaggagacGUGgCGCACCGC--CGCCAa- -3'
miRNA:   3'- -UGAGA-------------CACgGCGUGGCGauGCGGUag -5'
11517 3' -57.7 NC_003085.1 + 25500 0.67 0.441988
Target:  5'- cGCUCaGUGCUGCucaGCCGU--UGCCGUUg -3'
miRNA:   3'- -UGAGaCACGGCG---UGGCGauGCGGUAG- -5'
11517 3' -57.7 NC_003085.1 + 39252 0.68 0.422689
Target:  5'- cACUCUGgGCCGCAgCauguGCUGCGCg--- -3'
miRNA:   3'- -UGAGACaCGGCGUgG----CGAUGCGguag -5'
11517 3' -57.7 NC_003085.1 + 38932 0.68 0.422689
Target:  5'- ---aUGaUGCUGuCGCCGC-GCGCCGUCg -3'
miRNA:   3'- ugagAC-ACGGC-GUGGCGaUGCGGUAG- -5'
11517 3' -57.7 NC_003085.1 + 40615 0.68 0.403905
Target:  5'- gGC-CUGUGCUGacgGCCGCU--GCCGUCc -3'
miRNA:   3'- -UGaGACACGGCg--UGGCGAugCGGUAG- -5'
11517 3' -57.7 NC_003085.1 + 2100 0.68 0.403905
Target:  5'- ------cGCCGCACCuCgGCGCCAUCg -3'
miRNA:   3'- ugagacaCGGCGUGGcGaUGCGGUAG- -5'
11517 3' -57.7 NC_003085.1 + 34603 0.68 0.385657
Target:  5'- cGCUCgcgGCCGCugUGUUgcugACGCUGUCg -3'
miRNA:   3'- -UGAGacaCGGCGugGCGA----UGCGGUAG- -5'
11517 3' -57.7 NC_003085.1 + 7466 0.69 0.367963
Target:  5'- gACUC-GUGCCaGUucaCGCggGCGCCGUCg -3'
miRNA:   3'- -UGAGaCACGG-CGug-GCGa-UGCGGUAG- -5'
11517 3' -57.7 NC_003085.1 + 43450 0.69 0.367963
Target:  5'- ----gGUGCCGCGCUGCUgaGCGaugaCGUCa -3'
miRNA:   3'- ugagaCACGGCGUGGCGA--UGCg---GUAG- -5'
11517 3' -57.7 NC_003085.1 + 48909 0.69 0.342484
Target:  5'- ------aGCCGCGCCGCcucGCGCCGUUc -3'
miRNA:   3'- ugagacaCGGCGUGGCGa--UGCGGUAG- -5'
11517 3' -57.7 NC_003085.1 + 37293 0.69 0.342484
Target:  5'- gGCggCUGgGCCGCcagaauugaagGCCGCUgGCGCCGUg -3'
miRNA:   3'- -UGa-GACaCGGCG-----------UGGCGA-UGCGGUAg -5'
11517 3' -57.7 NC_003085.1 + 23334 0.69 0.334279
Target:  5'- cGCUCUGgccgGCCaaGCGCCGCcggcCGCCGa- -3'
miRNA:   3'- -UGAGACa---CGG--CGUGGCGau--GCGGUag -5'
11517 3' -57.7 NC_003085.1 + 20777 0.7 0.310533
Target:  5'- --gCUGUGCCGCAuCCGCUAUGagGUg -3'
miRNA:   3'- ugaGACACGGCGU-GGCGAUGCggUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.