miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11518 3' -56.7 NC_003085.1 + 28675 0.69 0.434057
Target:  5'- --gCGAGCGccacaccaccGGCGuguccaccGCCAUGUGCGCCu -3'
miRNA:   3'- gaaGCUCGU----------CCGC--------UGGUGCAUGCGGc -5'
11518 3' -56.7 NC_003085.1 + 29209 0.73 0.256498
Target:  5'- --gCGAGUAGGCGgacucaaucGCCugGUuccGCGCCGc -3'
miRNA:   3'- gaaGCUCGUCCGC---------UGGugCA---UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 29819 0.73 0.243694
Target:  5'- -gUgGGGCGcgacGGCGGCCACGUccugggcgacgACGCCGa -3'
miRNA:   3'- gaAgCUCGU----CCGCUGGUGCA-----------UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 30435 0.66 0.643132
Target:  5'- --cCGGGCGGGaugcuaGacGCCGCaGUGCGCCc -3'
miRNA:   3'- gaaGCUCGUCCg-----C--UGGUG-CAUGCGGc -5'
11518 3' -56.7 NC_003085.1 + 30556 0.67 0.577841
Target:  5'- -gUCGAGUccAGGCG-UCGCGUccagguCGCCGc -3'
miRNA:   3'- gaAGCUCG--UCCGCuGGUGCAu-----GCGGC- -5'
11518 3' -56.7 NC_003085.1 + 31968 0.68 0.5141
Target:  5'- --gCGGGCuGGCGACUGCccccguUACGCCu -3'
miRNA:   3'- gaaGCUCGuCCGCUGGUGc-----AUGCGGc -5'
11518 3' -56.7 NC_003085.1 + 33228 0.66 0.610404
Target:  5'- -gUCGGGaacagAGGCG-CCACGUACugGUCGa -3'
miRNA:   3'- gaAGCUCg----UCCGCuGGUGCAUG--CGGC- -5'
11518 3' -56.7 NC_003085.1 + 33926 0.7 0.396833
Target:  5'- --cCGuGCAGuuGACUACGUGgGCCGg -3'
miRNA:   3'- gaaGCuCGUCcgCUGGUGCAUgCGGC- -5'
11518 3' -56.7 NC_003085.1 + 34549 0.69 0.453413
Target:  5'- --gCGAGCGccaccagccGGC--CCGCGUGCGCCGc -3'
miRNA:   3'- gaaGCUCGU---------CCGcuGGUGCAUGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 35970 0.67 0.567063
Target:  5'- uUUCGcGUAGGgGGCCAgGccgACGCCc -3'
miRNA:   3'- gAAGCuCGUCCgCUGGUgCa--UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 36017 0.67 0.545672
Target:  5'- -cUUG-GCGgauGGCGGCCAUGggcACGCCGu -3'
miRNA:   3'- gaAGCuCGU---CCGCUGGUGCa--UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 36654 0.66 0.598432
Target:  5'- ---aGGGCguauaGGGCGACCuugucucacauagGCGgGCGCCGg -3'
miRNA:   3'- gaagCUCG-----UCCGCUGG-------------UGCaUGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 36951 0.67 0.535072
Target:  5'- -cUCGA-CAGGCagggccgcggGGCCAUGUugGCGCCGc -3'
miRNA:   3'- gaAGCUcGUCCG----------CUGGUGCA--UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 38325 0.66 0.631129
Target:  5'- -gUCGcgcggaAGUAGGUGGCCaccgccgACGUGCuGCCGu -3'
miRNA:   3'- gaAGC------UCGUCCGCUGG-------UGCAUG-CGGC- -5'
11518 3' -56.7 NC_003085.1 + 39620 0.72 0.290913
Target:  5'- --cCGAGCAGGUGGCCGCaGgagugGCGCa- -3'
miRNA:   3'- gaaGCUCGUCCGCUGGUG-Ca----UGCGgc -5'
11518 3' -56.7 NC_003085.1 + 41039 0.66 0.621307
Target:  5'- gCUUgCGAGCGcuGGCGggGCCACagggACGCCu -3'
miRNA:   3'- -GAA-GCUCGU--CCGC--UGGUGca--UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 41351 0.68 0.5141
Target:  5'- cCUUCuacGGCAGGCcgGGCCGCGUcacccACGUCa -3'
miRNA:   3'- -GAAGc--UCGUCCG--CUGGUGCA-----UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 47299 0.66 0.596259
Target:  5'- aCUUCGAcGCcuuGGCGACguUGUccaccaucuccagcGCGCCGc -3'
miRNA:   3'- -GAAGCU-CGu--CCGCUGguGCA--------------UGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.