miRNA display CGI


Results 41 - 58 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11518 3' -56.7 NC_003085.1 + 6317 0.7 0.379008
Target:  5'- -gUCGuGUAGGCgucGACCAUGUcggaGCGCCu -3'
miRNA:   3'- gaAGCuCGUCCG---CUGGUGCA----UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 27470 0.71 0.345002
Target:  5'- --gCGGGCAGGU-ACCACGcGCGCgCGg -3'
miRNA:   3'- gaaGCUCGUCCGcUGGUGCaUGCG-GC- -5'
11518 3' -56.7 NC_003085.1 + 8199 0.71 0.336851
Target:  5'- -cUUGAGCAGGUccACCACGUcaucaGCGCCc -3'
miRNA:   3'- gaAGCUCGUCCGc-UGGUGCA-----UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 29209 0.73 0.256498
Target:  5'- --gCGAGUAGGCGgacucaaucGCCugGUuccGCGCCGc -3'
miRNA:   3'- gaaGCUCGUCCGC---------UGGugCA---UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 29819 0.73 0.243694
Target:  5'- -gUgGGGCGcgacGGCGGCCACGUccugggcgacgACGCCGa -3'
miRNA:   3'- gaAgCUCGU----CCGCUGGUGCA-----------UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 21888 0.68 0.503739
Target:  5'- --aUGAGCucGGCGGCCuuGgGCGCCa -3'
miRNA:   3'- gaaGCUCGu-CCGCUGGugCaUGCGGc -5'
11518 3' -56.7 NC_003085.1 + 26679 0.68 0.52245
Target:  5'- --aCGAGgAGGCGACggucgaagaagaGCGUGuCGCCGc -3'
miRNA:   3'- gaaGCUCgUCCGCUGg-----------UGCAU-GCGGC- -5'
11518 3' -56.7 NC_003085.1 + 30435 0.66 0.643132
Target:  5'- --cCGGGCGGGaugcuaGacGCCGCaGUGCGCCc -3'
miRNA:   3'- gaaGCUCGUCCg-----C--UGGUG-CAUGCGGc -5'
11518 3' -56.7 NC_003085.1 + 10548 0.66 0.63222
Target:  5'- --gCGcAGCAGGuCGGCCAgcCGagggGCGCCa -3'
miRNA:   3'- gaaGC-UCGUCC-GCUGGU--GCa---UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 38325 0.66 0.631129
Target:  5'- -gUCGcgcggaAGUAGGUGGCCaccgccgACGUGCuGCCGu -3'
miRNA:   3'- gaAGC------UCGUCCGCUGG-------UGCAUG-CGGC- -5'
11518 3' -56.7 NC_003085.1 + 41039 0.66 0.621307
Target:  5'- gCUUgCGAGCGcuGGCGggGCCACagggACGCCu -3'
miRNA:   3'- -GAA-GCUCGU--CCGC--UGGUGca--UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 3960 0.66 0.616945
Target:  5'- --aCGAGCAGuGCcACCGCGacagacggcgggcGCGCCGu -3'
miRNA:   3'- gaaGCUCGUC-CGcUGGUGCa------------UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 16965 0.66 0.610404
Target:  5'- --gCGAGguGGCucaucgcucGGCCuCGUugGCCu -3'
miRNA:   3'- gaaGCUCguCCG---------CUGGuGCAugCGGc -5'
11518 3' -56.7 NC_003085.1 + 33228 0.66 0.610404
Target:  5'- -gUCGGGaacagAGGCG-CCACGUACugGUCGa -3'
miRNA:   3'- gaAGCUCg----UCCGCuGGUGCAUG--CGGC- -5'
11518 3' -56.7 NC_003085.1 + 20933 0.66 0.599519
Target:  5'- --cUGGGUGGGCGGCaccgcaGCGgcgagcucgGCGCCGg -3'
miRNA:   3'- gaaGCUCGUCCGCUGg-----UGCa--------UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 744 0.66 0.599519
Target:  5'- --gCGGGaCAGGUGGCCGgCG-ACGuCCGg -3'
miRNA:   3'- gaaGCUC-GUCCGCUGGU-GCaUGC-GGC- -5'
11518 3' -56.7 NC_003085.1 + 30556 0.67 0.577841
Target:  5'- -gUCGAGUccAGGCG-UCGCGUccagguCGCCGc -3'
miRNA:   3'- gaAGCUCG--UCCGCuGGUGCAu-----GCGGC- -5'
11518 3' -56.7 NC_003085.1 + 920 0.66 0.643132
Target:  5'- cCUUCGGGCAGcGCGACgugagagaCGCGcucgACGaCCu -3'
miRNA:   3'- -GAAGCUCGUC-CGCUG--------GUGCa---UGC-GGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.