miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11518 3' -56.7 NC_003085.1 + 1787 0.71 0.345002
Target:  5'- --gUGGGaCAGGUGGCC-CGUugGCUGg -3'
miRNA:   3'- gaaGCUC-GUCCGCUGGuGCAugCGGC- -5'
11518 3' -56.7 NC_003085.1 + 39620 0.72 0.290913
Target:  5'- --cCGAGCAGGUGGCCGCaGgagugGCGCa- -3'
miRNA:   3'- gaaGCUCGUCCGCUGGUG-Ca----UGCGgc -5'
11518 3' -56.7 NC_003085.1 + 26708 0.73 0.256498
Target:  5'- -cUCGAGCGcgcgcagggcGGUGACgGCGcgGCGCCGg -3'
miRNA:   3'- gaAGCUCGU----------CCGCUGgUGCa-UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 36017 0.67 0.545672
Target:  5'- -cUUG-GCGgauGGCGGCCAUGggcACGCCGu -3'
miRNA:   3'- gaAGCuCGU---CCGCUGGUGCa--UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 35970 0.67 0.567063
Target:  5'- uUUCGcGUAGGgGGCCAgGccgACGCCc -3'
miRNA:   3'- gAAGCuCGUCCgCUGGUgCa--UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 13370 0.66 0.610404
Target:  5'- ---aGAGguGGCuGACCACGUcaagaaguuCGUCGg -3'
miRNA:   3'- gaagCUCguCCG-CUGGUGCAu--------GCGGC- -5'
11518 3' -56.7 NC_003085.1 + 17380 0.66 0.610404
Target:  5'- --gCGAGCAGGacucguguUGGCgaGCGUAcCGCCGg -3'
miRNA:   3'- gaaGCUCGUCC--------GCUGg-UGCAU-GCGGC- -5'
11518 3' -56.7 NC_003085.1 + 11896 0.66 0.599519
Target:  5'- --cCGAGUucauggccAGGCGcuCCACGUuuGCCGa -3'
miRNA:   3'- gaaGCUCG--------UCCGCu-GGUGCAugCGGC- -5'
11518 3' -56.7 NC_003085.1 + 36654 0.66 0.598432
Target:  5'- ---aGGGCguauaGGGCGACCuugucucacauagGCGgGCGCCGg -3'
miRNA:   3'- gaagCUCG-----UCCGCUGG-------------UGCaUGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 47299 0.66 0.596259
Target:  5'- aCUUCGAcGCcuuGGCGACguUGUccaccaucuccagcGCGCCGc -3'
miRNA:   3'- -GAAGCU-CGu--CCGCUGguGCA--------------UGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 23150 0.67 0.588662
Target:  5'- gCUUCGAGCAGGUGG---UGU-CGCCc -3'
miRNA:   3'- -GAAGCUCGUCCGCUgguGCAuGCGGc -5'
11518 3' -56.7 NC_003085.1 + 8838 0.67 0.588662
Target:  5'- gCUgcgCGAGCaggagGGGCGGCCAUG-ACGUg- -3'
miRNA:   3'- -GAa--GCUCG-----UCCGCUGGUGCaUGCGgc -5'
11518 3' -56.7 NC_003085.1 + 18883 0.67 0.582164
Target:  5'- -aUgGAGcCGGGCGAgguccacacgcucuaCgGCGUACGCCu -3'
miRNA:   3'- gaAgCUC-GUCCGCU---------------GgUGCAUGCGGc -5'
11518 3' -56.7 NC_003085.1 + 12094 0.67 0.577841
Target:  5'- ---gGGGCGGGUGACgCGCGcaagucggACGCCc -3'
miRNA:   3'- gaagCUCGUCCGCUG-GUGCa-------UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 8524 0.67 0.577841
Target:  5'- --gCGGgcGCAGGCGAagGCGgugACGCCa -3'
miRNA:   3'- gaaGCU--CGUCCGCUggUGCa--UGCGGc -5'
11518 3' -56.7 NC_003085.1 + 5776 0.67 0.567063
Target:  5'- -cUUGAGCGGcGCGugCuC-UACGCCGu -3'
miRNA:   3'- gaAGCUCGUC-CGCugGuGcAUGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 12034 0.67 0.567063
Target:  5'- --cCGGuGCuGcGCGACUuCGUGCGCCGc -3'
miRNA:   3'- gaaGCU-CGuC-CGCUGGuGCAUGCGGC- -5'
11518 3' -56.7 NC_003085.1 + 3445 1.1 0.000638
Target:  5'- aCUUCGAGCAGGCGACCACGUACGCCGa -3'
miRNA:   3'- -GAAGCUCGUCCGCUGGUGCAUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.