Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11518 | 5' | -53.3 | NC_003085.1 | + | 33940 | 0.66 | 0.784465 |
Target: 5'- uGGCGAacgaGUCgccgUGCaGUUGACUACGugGGCc -3' miRNA: 3'- -CCGCUg---CAG----ACG-CAGCUGAUGU--UCGa -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 11633 | 0.66 | 0.804228 |
Target: 5'- gGGCagGACGg-UGCGUUGGC-GCAGGCc -3' miRNA: 3'- -CCG--CUGCagACGCAGCUGaUGUUCGa -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 225 | 0.66 | 0.794434 |
Target: 5'- gGGaCGACGUCaUGCG--GACUGCcuguAAGCUc -3' miRNA: 3'- -CC-GCUGCAG-ACGCagCUGAUG----UUCGA- -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 41050 | 0.66 | 0.784465 |
Target: 5'- cGGCuuGGCGggCUGCuacgCGACUGgGGGCUg -3' miRNA: 3'- -CCG--CUGCa-GACGca--GCUGAUgUUCGA- -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 48391 | 0.66 | 0.774333 |
Target: 5'- cGGCGAgcagcgccgcauUGUCUGCcUCGGCgGCGcuGGCUu -3' miRNA: 3'- -CCGCU------------GCAGACGcAGCUGaUGU--UCGA- -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 26571 | 0.66 | 0.798373 |
Target: 5'- aGGCGAUGUCggccacagacuccgGCGUgGGgUGCA-GCa -3' miRNA: 3'- -CCGCUGCAGa-------------CGCAgCUgAUGUuCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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