Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11518 | 5' | -53.3 | NC_003085.1 | + | 3482 | 1.1 | 0.001289 |
Target: 5'- cGGCGACGUCUGCGUCGACUACAAGCUc -3' miRNA: 3'- -CCGCUGCAGACGCAGCUGAUGUUCGA- -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 30221 | 0.78 | 0.197019 |
Target: 5'- gGGUGACGUcCUGCGUgGGCUGCugGGGCc -3' miRNA: 3'- -CCGCUGCA-GACGCAgCUGAUG--UUCGa -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 6324 | 0.78 | 0.213663 |
Target: 5'- cGGCGGCGUCguguagGCGUCGACcAUgucgGAGCg -3' miRNA: 3'- -CCGCUGCAGa-----CGCAGCUGaUG----UUCGa -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 48958 | 0.75 | 0.307774 |
Target: 5'- uGGCGGgccaaugcucCGUgUGCGgCGACUGCAAGCc -3' miRNA: 3'- -CCGCU----------GCAgACGCaGCUGAUGUUCGa -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 1551 | 0.7 | 0.555429 |
Target: 5'- uGGCGACGgugacggGCGgCGACUugGGGUg -3' miRNA: 3'- -CCGCUGCaga----CGCaGCUGAugUUCGa -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 37323 | 0.7 | 0.566412 |
Target: 5'- cGUGugGUCUGCGaCGcCUGCcuuGAGCg -3' miRNA: 3'- cCGCugCAGACGCaGCuGAUG---UUCGa -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 21531 | 0.7 | 0.57745 |
Target: 5'- cGGCgcuGACGUCccUGCGU-GACUACcGGCg -3' miRNA: 3'- -CCG---CUGCAG--ACGCAgCUGAUGuUCGa -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 1737 | 0.69 | 0.599656 |
Target: 5'- gGGUGACGUCgccGCGUUgguaguaggGACgGCAGGCc -3' miRNA: 3'- -CCGCUGCAGa--CGCAG---------CUGaUGUUCGa -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 8032 | 0.69 | 0.610807 |
Target: 5'- uGGCGuACGggaCUGCGcUCGACaACGcAGCUg -3' miRNA: 3'- -CCGC-UGCa--GACGC-AGCUGaUGU-UCGA- -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 730 | 0.69 | 0.610807 |
Target: 5'- cGGCGACGUCcggGCGgu-GCU-CGAGCg -3' miRNA: 3'- -CCGCUGCAGa--CGCagcUGAuGUUCGa -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 23728 | 0.69 | 0.621977 |
Target: 5'- gGGCGGCGUucgcCUGCG-CGGcCUGCucGCg -3' miRNA: 3'- -CCGCUGCA----GACGCaGCU-GAUGuuCGa -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 28003 | 0.69 | 0.6555 |
Target: 5'- cGGaCG-CGUCUGCGUcaacgaCGGCUACGuggacGGCg -3' miRNA: 3'- -CC-GCuGCAGACGCA------GCUGAUGU-----UCGa -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 35481 | 0.68 | 0.677755 |
Target: 5'- gGGaUGACGUCcaaCGUCGGCUGCGcagAGCc -3' miRNA: 3'- -CC-GCUGCAGac-GCAGCUGAUGU---UCGa -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 17332 | 0.68 | 0.699832 |
Target: 5'- uGCGACGUUUGaCGUgGAacccugGCGAGCc -3' miRNA: 3'- cCGCUGCAGAC-GCAgCUga----UGUUCGa -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 14731 | 0.68 | 0.699832 |
Target: 5'- aGgGACGUCgUGCuggCGACUgACGAGCa -3' miRNA: 3'- cCgCUGCAG-ACGca-GCUGA-UGUUCGa -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 39027 | 0.68 | 0.710774 |
Target: 5'- aGGCGACGgcaUGCGUgGGC---GAGCg -3' miRNA: 3'- -CCGCUGCag-ACGCAgCUGaugUUCGa -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 30021 | 0.67 | 0.721636 |
Target: 5'- uGGCGACGUCgucCG-CGGCUuccagggccagcACAAGUUg -3' miRNA: 3'- -CCGCUGCAGac-GCaGCUGA------------UGUUCGA- -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 48183 | 0.67 | 0.764049 |
Target: 5'- uGGCGACGUUgccGCcaaGUaCGACagcgACGGGCUg -3' miRNA: 3'- -CCGCUGCAGa--CG---CA-GCUGa---UGUUCGA- -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 37697 | 0.67 | 0.76818 |
Target: 5'- aGGCGguaccACGUCaaugcGCGUCGACUGCuacgacggaaccccAGCg -3' miRNA: 3'- -CCGC-----UGCAGa----CGCAGCUGAUGu-------------UCGa -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 48391 | 0.66 | 0.774333 |
Target: 5'- cGGCGAgcagcgccgcauUGUCUGCcUCGGCgGCGcuGGCUu -3' miRNA: 3'- -CCGCU------------GCAGACGcAGCUGaUGU--UCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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