Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11518 | 5' | -53.3 | NC_003085.1 | + | 3482 | 1.1 | 0.001289 |
Target: 5'- cGGCGACGUCUGCGUCGACUACAAGCUc -3' miRNA: 3'- -CCGCUGCAGACGCAGCUGAUGUUCGA- -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 3407 | 0.66 | 0.784465 |
Target: 5'- aGCGuCGUCUGUG-CGGCgACcAGCg -3' miRNA: 3'- cCGCuGCAGACGCaGCUGaUGuUCGa -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 1737 | 0.69 | 0.599656 |
Target: 5'- gGGUGACGUCgccGCGUUgguaguaggGACgGCAGGCc -3' miRNA: 3'- -CCGCUGCAGa--CGCAG---------CUGaUGUUCGa -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 1551 | 0.7 | 0.555429 |
Target: 5'- uGGCGACGgugacggGCGgCGACUugGGGUg -3' miRNA: 3'- -CCGCUGCaga----CGCaGCUGAugUUCGa -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 730 | 0.69 | 0.610807 |
Target: 5'- cGGCGACGUCcggGCGgu-GCU-CGAGCg -3' miRNA: 3'- -CCGCUGCAGa--CGCagcUGAuGUUCGa -5' |
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11518 | 5' | -53.3 | NC_003085.1 | + | 225 | 0.66 | 0.794434 |
Target: 5'- gGGaCGACGUCaUGCG--GACUGCcuguAAGCUc -3' miRNA: 3'- -CC-GCUGCAG-ACGCagCUGAUG----UUCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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