miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11518 5' -53.3 NC_003085.1 + 3482 1.1 0.001289
Target:  5'- cGGCGACGUCUGCGUCGACUACAAGCUc -3'
miRNA:   3'- -CCGCUGCAGACGCAGCUGAUGUUCGA- -5'
11518 5' -53.3 NC_003085.1 + 30221 0.78 0.197019
Target:  5'- gGGUGACGUcCUGCGUgGGCUGCugGGGCc -3'
miRNA:   3'- -CCGCUGCA-GACGCAgCUGAUG--UUCGa -5'
11518 5' -53.3 NC_003085.1 + 6324 0.78 0.213663
Target:  5'- cGGCGGCGUCguguagGCGUCGACcAUgucgGAGCg -3'
miRNA:   3'- -CCGCUGCAGa-----CGCAGCUGaUG----UUCGa -5'
11518 5' -53.3 NC_003085.1 + 48958 0.75 0.307774
Target:  5'- uGGCGGgccaaugcucCGUgUGCGgCGACUGCAAGCc -3'
miRNA:   3'- -CCGCU----------GCAgACGCaGCUGAUGUUCGa -5'
11518 5' -53.3 NC_003085.1 + 1551 0.7 0.555429
Target:  5'- uGGCGACGgugacggGCGgCGACUugGGGUg -3'
miRNA:   3'- -CCGCUGCaga----CGCaGCUGAugUUCGa -5'
11518 5' -53.3 NC_003085.1 + 37323 0.7 0.566412
Target:  5'- cGUGugGUCUGCGaCGcCUGCcuuGAGCg -3'
miRNA:   3'- cCGCugCAGACGCaGCuGAUG---UUCGa -5'
11518 5' -53.3 NC_003085.1 + 21531 0.7 0.57745
Target:  5'- cGGCgcuGACGUCccUGCGU-GACUACcGGCg -3'
miRNA:   3'- -CCG---CUGCAG--ACGCAgCUGAUGuUCGa -5'
11518 5' -53.3 NC_003085.1 + 1737 0.69 0.599656
Target:  5'- gGGUGACGUCgccGCGUUgguaguaggGACgGCAGGCc -3'
miRNA:   3'- -CCGCUGCAGa--CGCAG---------CUGaUGUUCGa -5'
11518 5' -53.3 NC_003085.1 + 8032 0.69 0.610807
Target:  5'- uGGCGuACGggaCUGCGcUCGACaACGcAGCUg -3'
miRNA:   3'- -CCGC-UGCa--GACGC-AGCUGaUGU-UCGA- -5'
11518 5' -53.3 NC_003085.1 + 730 0.69 0.610807
Target:  5'- cGGCGACGUCcggGCGgu-GCU-CGAGCg -3'
miRNA:   3'- -CCGCUGCAGa--CGCagcUGAuGUUCGa -5'
11518 5' -53.3 NC_003085.1 + 23728 0.69 0.621977
Target:  5'- gGGCGGCGUucgcCUGCG-CGGcCUGCucGCg -3'
miRNA:   3'- -CCGCUGCA----GACGCaGCU-GAUGuuCGa -5'
11518 5' -53.3 NC_003085.1 + 28003 0.69 0.6555
Target:  5'- cGGaCG-CGUCUGCGUcaacgaCGGCUACGuggacGGCg -3'
miRNA:   3'- -CC-GCuGCAGACGCA------GCUGAUGU-----UCGa -5'
11518 5' -53.3 NC_003085.1 + 35481 0.68 0.677755
Target:  5'- gGGaUGACGUCcaaCGUCGGCUGCGcagAGCc -3'
miRNA:   3'- -CC-GCUGCAGac-GCAGCUGAUGU---UCGa -5'
11518 5' -53.3 NC_003085.1 + 17332 0.68 0.699832
Target:  5'- uGCGACGUUUGaCGUgGAacccugGCGAGCc -3'
miRNA:   3'- cCGCUGCAGAC-GCAgCUga----UGUUCGa -5'
11518 5' -53.3 NC_003085.1 + 14731 0.68 0.699832
Target:  5'- aGgGACGUCgUGCuggCGACUgACGAGCa -3'
miRNA:   3'- cCgCUGCAG-ACGca-GCUGA-UGUUCGa -5'
11518 5' -53.3 NC_003085.1 + 39027 0.68 0.710774
Target:  5'- aGGCGACGgcaUGCGUgGGC---GAGCg -3'
miRNA:   3'- -CCGCUGCag-ACGCAgCUGaugUUCGa -5'
11518 5' -53.3 NC_003085.1 + 30021 0.67 0.721636
Target:  5'- uGGCGACGUCgucCG-CGGCUuccagggccagcACAAGUUg -3'
miRNA:   3'- -CCGCUGCAGac-GCaGCUGA------------UGUUCGA- -5'
11518 5' -53.3 NC_003085.1 + 48183 0.67 0.764049
Target:  5'- uGGCGACGUUgccGCcaaGUaCGACagcgACGGGCUg -3'
miRNA:   3'- -CCGCUGCAGa--CG---CA-GCUGa---UGUUCGA- -5'
11518 5' -53.3 NC_003085.1 + 37697 0.67 0.76818
Target:  5'- aGGCGguaccACGUCaaugcGCGUCGACUGCuacgacggaaccccAGCg -3'
miRNA:   3'- -CCGC-----UGCAGa----CGCAGCUGAUGu-------------UCGa -5'
11518 5' -53.3 NC_003085.1 + 48391 0.66 0.774333
Target:  5'- cGGCGAgcagcgccgcauUGUCUGCcUCGGCgGCGcuGGCUu -3'
miRNA:   3'- -CCGCU------------GCAGACGcAGCUGaUGU--UCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.