miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11519 3' -63.1 NC_003085.1 + 351 0.67 0.287831
Target:  5'- -aGGGCGGCAAGggaugaGCGCCgacaacgggaGggGCCa -3'
miRNA:   3'- ggCCCGCCGUUCg-----CGCGGag--------CgaCGG- -5'
11519 3' -63.1 NC_003085.1 + 618 0.66 0.339273
Target:  5'- cCUGGGCGcGCucgaggcuGGCGCGgaCCUCGUcgagGCg -3'
miRNA:   3'- -GGCCCGC-CGu-------UCGCGC--GGAGCGa---CGg -5'
11519 3' -63.1 NC_003085.1 + 704 0.68 0.229245
Target:  5'- cUCGGGCGcggccugaGCAGGUccacccGCGCCUCagucgccuccgcugGUUGCCg -3'
miRNA:   3'- -GGCCCGC--------CGUUCG------CGCGGAG--------------CGACGG- -5'
11519 3' -63.1 NC_003085.1 + 722 0.71 0.149346
Target:  5'- uCCGGGCGGUgcucgaGCGCCUCGaCgagGUCc -3'
miRNA:   3'- -GGCCCGCCGuucg--CGCGGAGC-Ga--CGG- -5'
11519 3' -63.1 NC_003085.1 + 828 0.68 0.242726
Target:  5'- gCCGcaGGuCGuCGAGCGCGUCUCucacgucgcGCUGCCc -3'
miRNA:   3'- -GGC--CC-GCcGUUCGCGCGGAG---------CGACGG- -5'
11519 3' -63.1 NC_003085.1 + 1418 0.67 0.254355
Target:  5'- cCCaGGCGG-AAGCcguccguacuccaGCGCCaUCGCagUGCCa -3'
miRNA:   3'- -GGcCCGCCgUUCG-------------CGCGG-AGCG--ACGG- -5'
11519 3' -63.1 NC_003085.1 + 1540 0.67 0.25498
Target:  5'- aCGGGCGGCGacuuGGgGUGUCaugCGCUcCCc -3'
miRNA:   3'- gGCCCGCCGU----UCgCGCGGa--GCGAcGG- -5'
11519 3' -63.1 NC_003085.1 + 1713 0.72 0.124085
Target:  5'- -aGGGaCGGCAGGCcaugacuaCGCCUCcucugugugGCUGCCg -3'
miRNA:   3'- ggCCC-GCCGUUCGc-------GCGGAG---------CGACGG- -5'
11519 3' -63.1 NC_003085.1 + 2291 0.73 0.111488
Target:  5'- gCGGGCuccGGCAgcacGGCGCuggccuGCCUCGCcaccgGCCg -3'
miRNA:   3'- gGCCCG---CCGU----UCGCG------CGGAGCGa----CGG- -5'
11519 3' -63.1 NC_003085.1 + 2381 0.76 0.066458
Target:  5'- gCCGGuGgcgaGGCAGGCcaGCGCCgUGCUGCCg -3'
miRNA:   3'- -GGCC-Cg---CCGUUCG--CGCGGaGCGACGG- -5'
11519 3' -63.1 NC_003085.1 + 3304 0.66 0.338493
Target:  5'- gUGGGcCGGCccagguAGCGCcggcaucGCCUUGCggcaucggGCCa -3'
miRNA:   3'- gGCCC-GCCGu-----UCGCG-------CGGAGCGa-------CGG- -5'
11519 3' -63.1 NC_003085.1 + 3570 1.12 0.00009
Target:  5'- gCCGGGCGGCAAGCGCGCCUCGCUGCCg -3'
miRNA:   3'- -GGCCCGCCGUUCGCGCGGAGCGACGG- -5'
11519 3' -63.1 NC_003085.1 + 3652 0.68 0.242726
Target:  5'- gCCGccucGGCaGCgAGGCGCGCUUgCGCccgGCCg -3'
miRNA:   3'- -GGC----CCGcCG-UUCGCGCGGA-GCGa--CGG- -5'
11519 3' -63.1 NC_003085.1 + 3948 0.7 0.161544
Target:  5'- aCCGcgacaGaCGGCGGGCGCGCCgucgaCGC-GCCg -3'
miRNA:   3'- -GGCc----C-GCCGUUCGCGCGGa----GCGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 4243 0.69 0.203661
Target:  5'- gCCGGGCcGCA---GCGCUUCGCgcgcuugGCCu -3'
miRNA:   3'- -GGCCCGcCGUucgCGCGGAGCGa------CGG- -5'
11519 3' -63.1 NC_003085.1 + 4343 0.7 0.17194
Target:  5'- gUCGGGUacugcgacuacuugaGGcCAAGCGCGCgaagCGCUGCg -3'
miRNA:   3'- -GGCCCG---------------CC-GUUCGCGCGga--GCGACGg -5'
11519 3' -63.1 NC_003085.1 + 6937 0.68 0.230967
Target:  5'- uUCGGGCGGaCGGGUaGUGCUgCGCgGCUu -3'
miRNA:   3'- -GGCCCGCC-GUUCG-CGCGGaGCGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 6940 0.69 0.208889
Target:  5'- cCCGGGCGGCuGGGCGguCGaCUUCGgcagcgaUGCCc -3'
miRNA:   3'- -GGCCCGCCG-UUCGC--GC-GGAGCg------ACGG- -5'
11519 3' -63.1 NC_003085.1 + 7308 0.67 0.294788
Target:  5'- cCCGGGCuguccguaggGGCAGcGCuGCGCCaUCcacaUGCCg -3'
miRNA:   3'- -GGCCCG----------CCGUU-CG-CGCGG-AGcg--ACGG- -5'
11519 3' -63.1 NC_003085.1 + 7429 0.67 0.294788
Target:  5'- aCUGGaGCGGCGcccaggGGCGCGuguagcccgcguCCUCaGCcGCCu -3'
miRNA:   3'- -GGCC-CGCCGU------UCGCGC------------GGAG-CGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.