miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11519 3' -63.1 NC_003085.1 + 7909 0.66 0.309093
Target:  5'- uCgGGGCGaGCGcguccugucGGCGUGCaccaaCUCGUUGCg -3'
miRNA:   3'- -GgCCCGC-CGU---------UCGCGCG-----GAGCGACGg -5'
11519 3' -63.1 NC_003085.1 + 46738 0.66 0.309093
Target:  5'- uCCaGGCGGC-GGCgaaGCGCCUCGgcaucaCUGgCa -3'
miRNA:   3'- -GGcCCGCCGuUCG---CGCGGAGC------GACgG- -5'
11519 3' -63.1 NC_003085.1 + 27882 0.66 0.309093
Target:  5'- cCCGGGCaGCccaccGAGCaacucgucaugGC-CCUCGCggGCCg -3'
miRNA:   3'- -GGCCCGcCG-----UUCG-----------CGcGGAGCGa-CGG- -5'
11519 3' -63.1 NC_003085.1 + 48968 0.66 0.309093
Target:  5'- gCGGcGCGGCuGGCGgGCCaaUGCU-CCg -3'
miRNA:   3'- gGCC-CGCCGuUCGCgCGGa-GCGAcGG- -5'
11519 3' -63.1 NC_003085.1 + 16325 0.66 0.301875
Target:  5'- cCCGGGaguugGGCgAAGCGCuGUCUCug-GCCg -3'
miRNA:   3'- -GGCCCg----CCG-UUCGCG-CGGAGcgaCGG- -5'
11519 3' -63.1 NC_003085.1 + 41701 0.66 0.301875
Target:  5'- uCUGGGCGGCucGCucaCGCUUCaCgGCCu -3'
miRNA:   3'- -GGCCCGCCGuuCGc--GCGGAGcGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 46819 0.66 0.301875
Target:  5'- uUGGGCGGCAu---CaCCUCGCcGCCg -3'
miRNA:   3'- gGCCCGCCGUucgcGcGGAGCGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 7308 0.67 0.294788
Target:  5'- cCCGGGCuguccguaggGGCAGcGCuGCGCCaUCcacaUGCCg -3'
miRNA:   3'- -GGCCCG----------CCGUU-CG-CGCGG-AGcg--ACGG- -5'
11519 3' -63.1 NC_003085.1 + 22830 0.67 0.294788
Target:  5'- aCCGcGGCgGGCGucgucGGCGCggGUgUCGgaGCCg -3'
miRNA:   3'- -GGC-CCG-CCGU-----UCGCG--CGgAGCgaCGG- -5'
11519 3' -63.1 NC_003085.1 + 7429 0.67 0.294788
Target:  5'- aCUGGaGCGGCGcccaggGGCGCGuguagcccgcguCCUCaGCcGCCu -3'
miRNA:   3'- -GGCC-CGCCGU------UCGCGC------------GGAG-CGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 25256 0.67 0.293386
Target:  5'- uCCGcGGCgGGCGucgucgucGGCGCGCCcgucuaccucacCGCgacgGCCg -3'
miRNA:   3'- -GGC-CCG-CCGU--------UCGCGCGGa-----------GCGa---CGG- -5'
11519 3' -63.1 NC_003085.1 + 31968 0.67 0.287831
Target:  5'- gCGGGCuGGCGAcuGCccccguuaCGCCUggggcuggCGCUGCCu -3'
miRNA:   3'- gGCCCG-CCGUU--CGc-------GCGGA--------GCGACGG- -5'
11519 3' -63.1 NC_003085.1 + 351 0.67 0.287831
Target:  5'- -aGGGCGGCAAGggaugaGCGCCgacaacgggaGggGCCa -3'
miRNA:   3'- ggCCCGCCGUUCg-----CGCGGag--------CgaCGG- -5'
11519 3' -63.1 NC_003085.1 + 16547 0.67 0.287831
Target:  5'- aCGGGaaGGC-GGCGCGCaggUCGgacaCUGCCg -3'
miRNA:   3'- gGCCCg-CCGuUCGCGCGg--AGC----GACGG- -5'
11519 3' -63.1 NC_003085.1 + 7779 0.67 0.281004
Target:  5'- aUCGucGCGGCGAGCGCa-UUCGCgGCCc -3'
miRNA:   3'- -GGCc-CGCCGUUCGCGcgGAGCGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 32048 0.67 0.281004
Target:  5'- -gGGGCGGCGAGUG-GCCUgggggacagcaaUGCggaccugaGCCg -3'
miRNA:   3'- ggCCCGCCGUUCGCgCGGA------------GCGa-------CGG- -5'
11519 3' -63.1 NC_003085.1 + 48600 0.67 0.281004
Target:  5'- gCCGGGaagGcGCGAGCgauGCGCUUgGC-GCCg -3'
miRNA:   3'- -GGCCCg--C-CGUUCG---CGCGGAgCGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 38431 0.67 0.281004
Target:  5'- gCC-GGCGGCAuuCGUGCCcaggaaguugCGCgUGCCa -3'
miRNA:   3'- -GGcCCGCCGUucGCGCGGa---------GCG-ACGG- -5'
11519 3' -63.1 NC_003085.1 + 48958 0.67 0.274306
Target:  5'- uCCGGucCGGCccGCGCGCCUucaucuccgCGCUgaugGCCg -3'
miRNA:   3'- -GGCCc-GCCGuuCGCGCGGA---------GCGA----CGG- -5'
11519 3' -63.1 NC_003085.1 + 20929 0.67 0.274306
Target:  5'- gUGGGCGGCAccgcAGCgGCGagCUCgGC-GCCg -3'
miRNA:   3'- gGCCCGCCGU----UCG-CGCg-GAG-CGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.