Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11519 | 5' | -57.7 | NC_003085.1 | + | 43374 | 0.66 | 0.549781 |
|
Target: 5'- -cGGCAaGCAGGgaucUGCCUuGG-CCGAa -3' miRNA: 3'- gaCCGU-CGUCCaua-ACGGG-CCaGGCU- -5' |
|||||||
| 11519 | 5' | -57.7 | NC_003085.1 | + | 29243 | 0.66 | 0.511637 |
|
Target: 5'- -gGGCAGCgAGGccuaccgcaacGCCCaGUCCGAa -3' miRNA: 3'- gaCCGUCG-UCCauaa-------CGGGcCAGGCU- -5' |
|||||||
| 11519 | 5' | -57.7 | NC_003085.1 | + | 11145 | 0.67 | 0.470605 |
|
Target: 5'- cCUGGCGGUGcaggccgagguugguGGUGUaGCCCGucacaaGUCCGGg -3' miRNA: 3'- -GACCGUCGU---------------CCAUAaCGGGC------CAGGCU- -5' |
|||||||
| 11519 | 5' | -57.7 | NC_003085.1 | + | 45359 | 0.67 | 0.446803 |
|
Target: 5'- gCUGGCAGCcuGGacc-GCCCGGcCCa- -3' miRNA: 3'- -GACCGUCGu-CCauaaCGGGCCaGGcu -5' |
|||||||
| 11519 | 5' | -57.7 | NC_003085.1 | + | 10243 | 0.68 | 0.437085 |
|
Target: 5'- --uGCAGcCGGGUcc-GCCCGGUCCu- -3' miRNA: 3'- gacCGUC-GUCCAuaaCGGGCCAGGcu -5' |
|||||||
| 11519 | 5' | -57.7 | NC_003085.1 | + | 36859 | 0.68 | 0.408679 |
|
Target: 5'- cCUGGCGGCAacccGGUggUGUCCGGcaCCa- -3' miRNA: 3'- -GACCGUCGU----CCAuaACGGGCCa-GGcu -5' |
|||||||
| 11519 | 5' | -57.7 | NC_003085.1 | + | 9059 | 0.71 | 0.278092 |
|
Target: 5'- -gGGCGGCAGGUGUggugGUUCGGcCCc- -3' miRNA: 3'- gaCCGUCGUCCAUAa---CGGGCCaGGcu -5' |
|||||||
| 11519 | 5' | -57.7 | NC_003085.1 | + | 41607 | 0.74 | 0.167347 |
|
Target: 5'- -cGGCAGCAgacgucacuccaccGGUAgcGCCCGGUagCCGAu -3' miRNA: 3'- gaCCGUCGU--------------CCAUaaCGGGCCA--GGCU- -5' |
|||||||
| 11519 | 5' | -57.7 | NC_003085.1 | + | 3607 | 1.09 | 0.000486 |
|
Target: 5'- aCUGGCAGCAGGUAUUGCCCGGUCCGAc -3' miRNA: 3'- -GACCGUCGUCCAUAACGGGCCAGGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home