Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11520 | 3' | -63.3 | NC_003085.1 | + | 17079 | 0.68 | 0.252741 |
Target: 5'- aGCGcccaucCGCGCUucucguCGCCGUCggcGUCGCGGg -3' miRNA: 3'- cUGCc-----GCGCGG------GCGGCAGa--CAGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 19909 | 0.67 | 0.29191 |
Target: 5'- cGACaGCG-GUUCGCCG-UUGUUGCGGu -3' miRNA: 3'- -CUGcCGCgCGGGCGGCaGACAGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 19993 | 0.67 | 0.271759 |
Target: 5'- uACGGCcCuG-CCGCCGUC-GUCGUGGg -3' miRNA: 3'- cUGCCGcG-CgGGCGGCAGaCAGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 20466 | 0.67 | 0.29191 |
Target: 5'- --gGGCGUGUCCGCgaaGUCUGUgggcUGCGa -3' miRNA: 3'- cugCCGCGCGGGCGg--CAGACA----GCGCc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 23728 | 0.67 | 0.265295 |
Target: 5'- gGGCGGCGUucGCCUGCgCGgcCUGcUCGCGc -3' miRNA: 3'- -CUGCCGCG--CGGGCG-GCa-GAC-AGCGCc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 25258 | 0.66 | 0.328054 |
Target: 5'- cGCGGCGgGCgUCGUCGUCgg-CGCGc -3' miRNA: 3'- cUGCCGCgCG-GGCGGCAGacaGCGCc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 25376 | 0.7 | 0.182712 |
Target: 5'- cACGGCGuCGUCCaccugGCCGgCcGUCGCGGu -3' miRNA: 3'- cUGCCGC-GCGGG-----CGGCaGaCAGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 25380 | 0.74 | 0.089779 |
Target: 5'- cGACGGCGgGCuucaCCGUCGUCcagaUGUCGCGu -3' miRNA: 3'- -CUGCCGCgCG----GGCGGCAG----ACAGCGCc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 25449 | 0.72 | 0.1237 |
Target: 5'- cGACGGUGaaGCCCGCCGUCgg-CGUGc -3' miRNA: 3'- -CUGCCGCg-CGGGCGGCAGacaGCGCc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 25636 | 0.68 | 0.24665 |
Target: 5'- aGGCGGUccGCGCCCGCCugcuUCUGccCGCu- -3' miRNA: 3'- -CUGCCG--CGCGGGCGGc---AGACa-GCGcc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 25704 | 0.72 | 0.129718 |
Target: 5'- aGACGGgGCGCCCggccuucGUCGUCUccuccucGUCGCGc -3' miRNA: 3'- -CUGCCgCGCGGG-------CGGCAGA-------CAGCGCc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 26728 | 0.7 | 0.173599 |
Target: 5'- uGACGGCGCGgC-GCCGgugCUGUCacucaaccgGCGGc -3' miRNA: 3'- -CUGCCGCGCgGgCGGCa--GACAG---------CGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 27675 | 0.67 | 0.285066 |
Target: 5'- uACGGCgGCGaCgUGCUGgugCUGUCGCGu -3' miRNA: 3'- cUGCCG-CGC-GgGCGGCa--GACAGCGCc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 27705 | 0.67 | 0.265295 |
Target: 5'- -cUGG-GCGUCCGcCCG-CUGUCGCGc -3' miRNA: 3'- cuGCCgCGCGGGC-GGCaGACAGCGCc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 29270 | 0.66 | 0.313211 |
Target: 5'- aGGCGcGUGCGCuCCG-CGUCc-UCGCGGc -3' miRNA: 3'- -CUGC-CGCGCG-GGCgGCAGacAGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 30327 | 0.67 | 0.265295 |
Target: 5'- -cCaGCGgGCCCuGgCGgacgCUGUCGCGGg -3' miRNA: 3'- cuGcCGCgCGGG-CgGCa---GACAGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 30864 | 0.67 | 0.265295 |
Target: 5'- uGCGGCGCGCUCacgGCUcuuccgGUCgagGUCGCGc -3' miRNA: 3'- cUGCCGCGCGGG---CGG------CAGa--CAGCGCc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 32298 | 0.66 | 0.313211 |
Target: 5'- cGCGGCGC-CCCGUgcUCUGg-GCGGu -3' miRNA: 3'- cUGCCGCGcGGGCGgcAGACagCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 32952 | 0.7 | 0.182712 |
Target: 5'- --aGGCGCGCCUGCCa--UGcUUGCGGc -3' miRNA: 3'- cugCCGCGCGGGCGGcagAC-AGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 33014 | 0.66 | 0.343412 |
Target: 5'- uGGCaGGCGCGCCUGuuGagccgGUCGCc- -3' miRNA: 3'- -CUG-CCGCGCGGGCggCaga--CAGCGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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