miRNA display CGI


Results 41 - 50 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11520 3' -63.3 NC_003085.1 + 36096 0.79 0.036138
Target:  5'- uACGGCGUGCCCaugGCCGccauccgccaagCUGUCGCGGa -3'
miRNA:   3'- cUGCCGCGCGGG---CGGCa-----------GACAGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 38160 0.67 0.271759
Target:  5'- uGGCGGCGCcggacaccuGCgCUGCCGUCUc-CGCGa -3'
miRNA:   3'- -CUGCCGCG---------CG-GGCGGCAGAcaGCGCc -5'
11520 3' -63.3 NC_003085.1 + 39727 0.66 0.351282
Target:  5'- cACGcGCGCGCCgcuCGgUGUC-GUCGCGa -3'
miRNA:   3'- cUGC-CGCGCGG---GCgGCAGaCAGCGCc -5'
11520 3' -63.3 NC_003085.1 + 40352 0.67 0.265295
Target:  5'- gGGCGGUGgGCaaGCCGcugCUGccCGCGGc -3'
miRNA:   3'- -CUGCCGCgCGggCGGCa--GACa-GCGCC- -5'
11520 3' -63.3 NC_003085.1 + 40985 0.66 0.305266
Target:  5'- cGCGGCGaGCUCGUCacggcagGUCUugagGUCGCGGc -3'
miRNA:   3'- cUGCCGCgCGGGCGG-------CAGA----CAGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 42629 0.66 0.343412
Target:  5'- cGCGGCGUuCCCcUCGUC-GUCGCGc -3'
miRNA:   3'- cUGCCGCGcGGGcGGCAGaCAGCGCc -5'
11520 3' -63.3 NC_003085.1 + 43669 0.68 0.229104
Target:  5'- gGAUGGCaGCGCCUGCgaccUCUGcCGUGGc -3'
miRNA:   3'- -CUGCCG-CGCGGGCGgc--AGACaGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 46890 0.67 0.282364
Target:  5'- cGGCGGCGaggugaugcCGCCCaaggacguggccaCCGUCaucGUCGCGGa -3'
miRNA:   3'- -CUGCCGC---------GCGGGc------------GGCAGa--CAGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 47022 0.7 0.178103
Target:  5'- gGACGGUGUGCCCGCguCGgcccCUG-CGCGc -3'
miRNA:   3'- -CUGCCGCGCGGGCG--GCa---GACaGCGCc -5'
11520 3' -63.3 NC_003085.1 + 48456 0.66 0.305982
Target:  5'- uGCGGCGCuGCUCGCCGcgcUCaGgagCGCGc -3'
miRNA:   3'- cUGCCGCG-CGGGCGGC---AGaCa--GCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.