miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11520 3' -63.3 NC_003085.1 + 25636 0.68 0.24665
Target:  5'- aGGCGGUccGCGCCCGCCugcuUCUGccCGCu- -3'
miRNA:   3'- -CUGCCG--CGCGGGCGGc---AGACa-GCGcc -5'
11520 3' -63.3 NC_003085.1 + 25449 0.72 0.1237
Target:  5'- cGACGGUGaaGCCCGCCGUCgg-CGUGc -3'
miRNA:   3'- -CUGCCGCg-CGGGCGGCAGacaGCGCc -5'
11520 3' -63.3 NC_003085.1 + 25380 0.74 0.089779
Target:  5'- cGACGGCGgGCuucaCCGUCGUCcagaUGUCGCGu -3'
miRNA:   3'- -CUGCCGCgCG----GGCGGCAG----ACAGCGCc -5'
11520 3' -63.3 NC_003085.1 + 25376 0.7 0.182712
Target:  5'- cACGGCGuCGUCCaccugGCCGgCcGUCGCGGu -3'
miRNA:   3'- cUGCCGC-GCGGG-----CGGCaGaCAGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 25258 0.66 0.328054
Target:  5'- cGCGGCGgGCgUCGUCGUCgg-CGCGc -3'
miRNA:   3'- cUGCCGCgCG-GGCGGCAGacaGCGCc -5'
11520 3' -63.3 NC_003085.1 + 23728 0.67 0.265295
Target:  5'- gGGCGGCGUucGCCUGCgCGgcCUGcUCGCGc -3'
miRNA:   3'- -CUGCCGCG--CGGGCG-GCa-GAC-AGCGCc -5'
11520 3' -63.3 NC_003085.1 + 20466 0.67 0.29191
Target:  5'- --gGGCGUGUCCGCgaaGUCUGUgggcUGCGa -3'
miRNA:   3'- cugCCGCGCGGGCGg--CAGACA----GCGCc -5'
11520 3' -63.3 NC_003085.1 + 19993 0.67 0.271759
Target:  5'- uACGGCcCuG-CCGCCGUC-GUCGUGGg -3'
miRNA:   3'- cUGCCGcG-CgGGCGGCAGaCAGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 19909 0.67 0.29191
Target:  5'- cGACaGCG-GUUCGCCG-UUGUUGCGGu -3'
miRNA:   3'- -CUGcCGCgCGGGCGGCaGACAGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 17079 0.68 0.252741
Target:  5'- aGCGcccaucCGCGCUucucguCGCCGUCggcGUCGCGGg -3'
miRNA:   3'- cUGCc-----GCGCGG------GCGGCAGa--CAGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 16541 0.66 0.313211
Target:  5'- aGGCGGCGCGCaggucggacaCUGCCGUCgccucgaaUGaCGuCGGc -3'
miRNA:   3'- -CUGCCGCGCG----------GGCGGCAG--------ACaGC-GCC- -5'
11520 3' -63.3 NC_003085.1 + 15196 0.67 0.271759
Target:  5'- -cCGGUGCGCCagCGCCG-Cgc-CGCGGa -3'
miRNA:   3'- cuGCCGCGCGG--GCGGCaGacaGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 14051 0.69 0.202211
Target:  5'- cGACGGCGUGUCCGUCGaggccaUCUGcgaGCGc -3'
miRNA:   3'- -CUGCCGCGCGGGCGGC------AGACag-CGCc -5'
11520 3' -63.3 NC_003085.1 + 13931 0.66 0.310304
Target:  5'- gGACGGgGCGCgCGCCGaagaagaaGCGGa -3'
miRNA:   3'- -CUGCCgCGCGgGCGGCagacag--CGCC- -5'
11520 3' -63.3 NC_003085.1 + 13791 0.66 0.320568
Target:  5'- aGGCGaGCGUGa-CGCCaGUCUG-CGUGGa -3'
miRNA:   3'- -CUGC-CGCGCggGCGG-CAGACaGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 12674 0.66 0.351282
Target:  5'- -cCGGgGCGCCaCGCgCGUCaGUCggaccacgagcaGCGGu -3'
miRNA:   3'- cuGCCgCGCGG-GCG-GCAGaCAG------------CGCC- -5'
11520 3' -63.3 NC_003085.1 + 12294 0.74 0.09223
Target:  5'- cGACGGCGCggugGUCCGCUGg--GUUGCGGc -3'
miRNA:   3'- -CUGCCGCG----CGGGCGGCagaCAGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 12022 0.68 0.24068
Target:  5'- -cUGGCGCaCCUGCCGgugCUG-CGCGa -3'
miRNA:   3'- cuGCCGCGcGGGCGGCa--GACaGCGCc -5'
11520 3' -63.3 NC_003085.1 + 7759 0.67 0.278349
Target:  5'- gGACGGcCGUGUCaucaGCCaUC-GUCGCGGc -3'
miRNA:   3'- -CUGCC-GCGCGGg---CGGcAGaCAGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 7492 0.66 0.320568
Target:  5'- uGACGG-GCGUCCG-CGUCgagcgGUUGCaGGa -3'
miRNA:   3'- -CUGCCgCGCGGGCgGCAGa----CAGCG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.