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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11520 | 3' | -63.3 | NC_003085.1 | + | 33014 | 0.66 | 0.343412 |
Target: 5'- uGGCaGGCGCGCCUGuuGagccgGUCGCc- -3' miRNA: 3'- -CUG-CCGCGCGGGCggCaga--CAGCGcc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 16541 | 0.66 | 0.313211 |
Target: 5'- aGGCGGCGCGCaggucggacaCUGCCGUCgccucgaaUGaCGuCGGc -3' miRNA: 3'- -CUGCCGCGCG----------GGCGGCAG--------ACaGC-GCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 32298 | 0.66 | 0.313211 |
Target: 5'- cGCGGCGC-CCCGUgcUCUGg-GCGGu -3' miRNA: 3'- cUGCCGCGcGGGCGgcAGACagCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 29270 | 0.66 | 0.313211 |
Target: 5'- aGGCGcGUGCGCuCCG-CGUCc-UCGCGGc -3' miRNA: 3'- -CUGC-CGCGCG-GGCgGCAGacAGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 48456 | 0.66 | 0.305982 |
Target: 5'- uGCGGCGCuGCUCGCCGcgcUCaGgagCGCGc -3' miRNA: 3'- cUGCCGCG-CGGGCGGC---AGaCa--GCGCc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 40985 | 0.66 | 0.305266 |
Target: 5'- cGCGGCGaGCUCGUCacggcagGUCUugagGUCGCGGc -3' miRNA: 3'- cUGCCGCgCGGGCGG-------CAGA----CAGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 19909 | 0.67 | 0.29191 |
Target: 5'- cGACaGCG-GUUCGCCG-UUGUUGCGGu -3' miRNA: 3'- -CUGcCGCgCGGGCGGCaGACAGCGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 20466 | 0.67 | 0.29191 |
Target: 5'- --gGGCGUGUCCGCgaaGUCUGUgggcUGCGa -3' miRNA: 3'- cugCCGCGCGGGCGg--CAGACA----GCGCc -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 2153 | 0.67 | 0.285066 |
Target: 5'- cGGCGGCuGCGCUCGUcgCGUCaccGUC-CGGg -3' miRNA: 3'- -CUGCCG-CGCGGGCG--GCAGa--CAGcGCC- -5' |
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11520 | 3' | -63.3 | NC_003085.1 | + | 12674 | 0.66 | 0.351282 |
Target: 5'- -cCGGgGCGCCaCGCgCGUCaGUCggaccacgagcaGCGGu -3' miRNA: 3'- cuGCCgCGCGG-GCG-GCAGaCAG------------CGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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