miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11520 3' -63.3 NC_003085.1 + 7759 0.67 0.278349
Target:  5'- gGACGGcCGUGUCaucaGCCaUC-GUCGCGGc -3'
miRNA:   3'- -CUGCC-GCGCGGg---CGGcAGaCAGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 5369 0.67 0.278349
Target:  5'- -uCGGCGCGUCCGgucCCGUCaccGUCGaGGc -3'
miRNA:   3'- cuGCCGCGCGGGC---GGCAGa--CAGCgCC- -5'
11520 3' -63.3 NC_003085.1 + 15196 0.67 0.271759
Target:  5'- -cCGGUGCGCCagCGCCG-Cgc-CGCGGa -3'
miRNA:   3'- cuGCCGCGCGG--GCGGCaGacaGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 3485 0.67 0.271759
Target:  5'- cGACGucuGCGUcgacuacaaGCUCGCCGUCUGgcgucUCGCGa -3'
miRNA:   3'- -CUGC---CGCG---------CGGGCGGCAGAC-----AGCGCc -5'
11520 3' -63.3 NC_003085.1 + 19993 0.67 0.271759
Target:  5'- uACGGCcCuG-CCGCCGUC-GUCGUGGg -3'
miRNA:   3'- cUGCCGcG-CgGGCGGCAGaCAGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 38160 0.67 0.271759
Target:  5'- uGGCGGCGCcggacaccuGCgCUGCCGUCUc-CGCGa -3'
miRNA:   3'- -CUGCCGCG---------CG-GGCGGCAGAcaGCGCc -5'
11520 3' -63.3 NC_003085.1 + 23728 0.67 0.265295
Target:  5'- gGGCGGCGUucGCCUGCgCGgcCUGcUCGCGc -3'
miRNA:   3'- -CUGCCGCG--CGGGCG-GCa-GAC-AGCGCc -5'
11520 3' -63.3 NC_003085.1 + 30327 0.67 0.265295
Target:  5'- -cCaGCGgGCCCuGgCGgacgCUGUCGCGGg -3'
miRNA:   3'- cuGcCGCgCGGG-CgGCa---GACAGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 30864 0.67 0.265295
Target:  5'- uGCGGCGCGCUCacgGCUcuuccgGUCgagGUCGCGc -3'
miRNA:   3'- cUGCCGCGCGGG---CGG------CAGa--CAGCGCc -5'
11520 3' -63.3 NC_003085.1 + 40352 0.67 0.265295
Target:  5'- gGGCGGUGgGCaaGCCGcugCUGccCGCGGc -3'
miRNA:   3'- -CUGCCGCgCGggCGGCa--GACa-GCGCC- -5'
11520 3' -63.3 NC_003085.1 + 27705 0.67 0.265295
Target:  5'- -cUGG-GCGUCCGcCCG-CUGUCGCGc -3'
miRNA:   3'- cuGCCgCGCGGGC-GGCaGACAGCGCc -5'
11520 3' -63.3 NC_003085.1 + 17079 0.68 0.252741
Target:  5'- aGCGcccaucCGCGCUucucguCGCCGUCggcGUCGCGGg -3'
miRNA:   3'- cUGCc-----GCGCGG------GCGGCAGa--CAGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 25636 0.68 0.24665
Target:  5'- aGGCGGUccGCGCCCGCCugcuUCUGccCGCu- -3'
miRNA:   3'- -CUGCCG--CGCGGGCGGc---AGACa-GCGcc -5'
11520 3' -63.3 NC_003085.1 + 12022 0.68 0.24068
Target:  5'- -cUGGCGCaCCUGCCGgugCUG-CGCGa -3'
miRNA:   3'- cuGCCGCGcGGGCGGCa--GACaGCGCc -5'
11520 3' -63.3 NC_003085.1 + 43669 0.68 0.229104
Target:  5'- gGAUGGCaGCGCCUGCgaccUCUGcCGUGGc -3'
miRNA:   3'- -CUGCCG-CGCGGGCGgc--AGACaGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 451 0.69 0.218001
Target:  5'- cACGGCGCggaggGCCaGCCGgcgCUGUUGCaGGu -3'
miRNA:   3'- cUGCCGCG-----CGGgCGGCa--GACAGCG-CC- -5'
11520 3' -63.3 NC_003085.1 + 14051 0.69 0.202211
Target:  5'- cGACGGCGUGUCCGUCGaggccaUCUGcgaGCGc -3'
miRNA:   3'- -CUGCCGCGCGGGCGGC------AGACag-CGCc -5'
11520 3' -63.3 NC_003085.1 + 25376 0.7 0.182712
Target:  5'- cACGGCGuCGUCCaccugGCCGgCcGUCGCGGu -3'
miRNA:   3'- cUGCCGC-GCGGG-----CGGCaGaCAGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 32952 0.7 0.182712
Target:  5'- --aGGCGCGCCUGCCa--UGcUUGCGGc -3'
miRNA:   3'- cugCCGCGCGGGCGGcagAC-AGCGCC- -5'
11520 3' -63.3 NC_003085.1 + 1041 0.7 0.182246
Target:  5'- cGGCGGCGUGuCCUGCCccggcagcggccuGUCUGgcacccggaCGCGGc -3'
miRNA:   3'- -CUGCCGCGC-GGGCGG-------------CAGACa--------GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.