miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11520 5' -55.8 NC_003085.1 + 20760 0.67 0.591821
Target:  5'- cUGCUGCccgGCUUCGGGCUGu--GCCg -3'
miRNA:   3'- -ACGACGcugCGGAGCUUGACcuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 42007 0.67 0.591821
Target:  5'- cUGCcccgGCGGCGUCggcaCGGACgaGGgcGCCu -3'
miRNA:   3'- -ACGa---CGCUGCGGa---GCUUGa-CCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 26113 0.67 0.601746
Target:  5'- gGCUGCcuccaucaucaacGACGCggccguggaaCUCGGGCUGcuGGCCa -3'
miRNA:   3'- aCGACG-------------CUGCG----------GAGCUUGACcuUCGG- -5'
11520 5' -55.8 NC_003085.1 + 40369 0.67 0.60285
Target:  5'- cUGCUGCccgcggcgcuGACGCCUCuGGCgcu-GGCCg -3'
miRNA:   3'- -ACGACG----------CUGCGGAGcUUGaccuUCGG- -5'
11520 5' -55.8 NC_003085.1 + 20346 0.67 0.580827
Target:  5'- gGCcaCGGCGCCUC-AGCgcgGGAgcGGCCg -3'
miRNA:   3'- aCGacGCUGCGGAGcUUGa--CCU--UCGG- -5'
11520 5' -55.8 NC_003085.1 + 21488 0.67 0.569876
Target:  5'- cUGC-GCGGCGUggUGGACUGGuuccccuugGAGCCc -3'
miRNA:   3'- -ACGaCGCUGCGgaGCUUGACC---------UUCGG- -5'
11520 5' -55.8 NC_003085.1 + 22903 0.67 0.613904
Target:  5'- cGCUGcCGACGUggcaaUCGGAgUcGggGCCg -3'
miRNA:   3'- aCGAC-GCUGCGg----AGCUUgAcCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 43272 0.67 0.60948
Target:  5'- cGCUGCacgagGACGCCgcgaaguaccgcgCGGcgguggagcgACUGGAgcaGGCCg -3'
miRNA:   3'- aCGACG-----CUGCGGa------------GCU----------UGACCU---UCGG- -5'
11520 5' -55.8 NC_003085.1 + 30226 0.67 0.60285
Target:  5'- gGCggggGUGACGuCCUgcgUGGGCUGcuGggGCCg -3'
miRNA:   3'- aCGa---CGCUGC-GGA---GCUUGAC--CuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 18033 0.67 0.613904
Target:  5'- cGCUGcCGGCGCUUC-AGgUGGccccagcaGAGCCc -3'
miRNA:   3'- aCGAC-GCUGCGGAGcUUgACC--------UUCGG- -5'
11520 5' -55.8 NC_003085.1 + 43732 0.67 0.591821
Target:  5'- cGCUGCaacccCGCCcccCGGgcuGCUGGAGGCg -3'
miRNA:   3'- aCGACGcu---GCGGa--GCU---UGACCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 23431 0.67 0.591821
Target:  5'- gUGCUGgGgcuGCGCCUCGGcgGCcGGcGGCg -3'
miRNA:   3'- -ACGACgC---UGCGGAGCU--UGaCCuUCGg -5'
11520 5' -55.8 NC_003085.1 + 47326 0.67 0.580827
Target:  5'- gGCggacgGUGACGCCU-GAGCacaacgccauggUGGAuGCCa -3'
miRNA:   3'- aCGa----CGCUGCGGAgCUUG------------ACCUuCGG- -5'
11520 5' -55.8 NC_003085.1 + 18565 0.67 0.569876
Target:  5'- aUGCUG-GcCGCCUUGAggAC-GGggGCUg -3'
miRNA:   3'- -ACGACgCuGCGGAGCU--UGaCCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 19950 0.67 0.60285
Target:  5'- cGCUGgUGACGgCUCcucaguGCUGGAgcaguuccuGGCCa -3'
miRNA:   3'- aCGAC-GCUGCgGAGcu----UGACCU---------UCGG- -5'
11520 5' -55.8 NC_003085.1 + 36446 0.68 0.548136
Target:  5'- gUGCggaggGCGGCGCCUCauGGcgagguagugccACUGGcGGCUu -3'
miRNA:   3'- -ACGa----CGCUGCGGAG--CU------------UGACCuUCGG- -5'
11520 5' -55.8 NC_003085.1 + 18061 0.68 0.495076
Target:  5'- gUGgaGguaGACGCCUCGGACaagcggcagUGGGAGUUg -3'
miRNA:   3'- -ACgaCg--CUGCGGAGCUUG---------ACCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 12189 0.68 0.501327
Target:  5'- gGUggGCGACGUCgagcgcuucccggCGAACUGGAAGg- -3'
miRNA:   3'- aCGa-CGCUGCGGa------------GCUUGACCUUCgg -5'
11520 5' -55.8 NC_003085.1 + 44253 0.68 0.516045
Target:  5'- gGCcGCGuCGCgCUCGGACUcGGccuGCCu -3'
miRNA:   3'- aCGaCGCuGCG-GAGCUUGA-CCuu-CGG- -5'
11520 5' -55.8 NC_003085.1 + 14207 0.68 0.537363
Target:  5'- gGCUGCGACaaGCC-CGcGCgcaagcGGAAGCa -3'
miRNA:   3'- aCGACGCUG--CGGaGCuUGa-----CCUUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.