Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11520 | 5' | -55.8 | NC_003085.1 | + | 16521 | 0.68 | 0.548136 |
Target: 5'- -aCUGcCGuCGCCUCGAAugacgucggcgcCUGGAuauggGGCCa -3' miRNA: 3'- acGAC-GCuGCGGAGCUU------------GACCU-----UCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 29344 | 0.68 | 0.548136 |
Target: 5'- cGUUGCGcUGCUggccgaauUCGGACUGGGcguugcgguaGGCCu -3' miRNA: 3'- aCGACGCuGCGG--------AGCUUGACCU----------UCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 36446 | 0.68 | 0.548136 |
Target: 5'- gUGCggaggGCGGCGCCUCauGGcgagguagugccACUGGcGGCUu -3' miRNA: 3'- -ACGa----CGCUGCGGAG--CU------------UGACCuUCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 14207 | 0.68 | 0.537363 |
Target: 5'- gGCUGCGACaaGCC-CGcGCgcaagcGGAAGCa -3' miRNA: 3'- aCGACGCUG--CGGaGCuUGa-----CCUUCGg -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 12189 | 0.68 | 0.501327 |
Target: 5'- gGUggGCGACGUCgagcgcuucccggCGAACUGGAAGg- -3' miRNA: 3'- aCGa-CGCUGCGGa------------GCUUGACCUUCgg -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 44253 | 0.68 | 0.516045 |
Target: 5'- gGCcGCGuCGCgCUCGGACUcGGccuGCCu -3' miRNA: 3'- aCGaCGCuGCG-GAGCUUGA-CCuu-CGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 18061 | 0.68 | 0.495076 |
Target: 5'- gUGgaGguaGACGCCUCGGACaagcggcagUGGGAGUUg -3' miRNA: 3'- -ACgaCg--CUGCGGAGCUUG---------ACCUUCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 9122 | 0.69 | 0.454366 |
Target: 5'- uUGCUGUcGCGaCCUCu--CUGGGAGCg -3' miRNA: 3'- -ACGACGcUGC-GGAGcuuGACCUUCGg -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 31971 | 0.69 | 0.464377 |
Target: 5'- gGCUgGCGAcugcccccguuaCGCCUgGGGCUGGcgcuGCCu -3' miRNA: 3'- aCGA-CGCU------------GCGGAgCUUGACCuu--CGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 45744 | 0.69 | 0.474503 |
Target: 5'- gGCUGacgGACGCCgaagcggCGAcgguGCUGGGccucacAGCCa -3' miRNA: 3'- aCGACg--CUGCGGa------GCU----UGACCU------UCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 7465 | 0.69 | 0.464377 |
Target: 5'- gGUggGCGucGCGCCUCacGCUGGAGGUg -3' miRNA: 3'- aCGa-CGC--UGCGGAGcuUGACCUUCGg -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 41088 | 0.69 | 0.464377 |
Target: 5'- cGCcaGCGACGCCcacggCGAugacgacgccGCUGGGccAGCCc -3' miRNA: 3'- aCGa-CGCUGCGGa----GCU----------UGACCU--UCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 48220 | 0.69 | 0.464377 |
Target: 5'- aGC-GCGACGCCgc--GCUGGAggaggcAGCCc -3' miRNA: 3'- aCGaCGCUGCGGagcuUGACCU------UCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 35463 | 0.69 | 0.451385 |
Target: 5'- gGCUGCGcagaGCC-CGAugugaacgaacucaACUGGAGGUCc -3' miRNA: 3'- aCGACGCug--CGGaGCU--------------UGACCUUCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 2719 | 0.69 | 0.444473 |
Target: 5'- ---cGUGACGCCaccaCGGcccaagcggguaGCUGGGAGCCa -3' miRNA: 3'- acgaCGCUGCGGa---GCU------------UGACCUUCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 18002 | 0.69 | 0.454366 |
Target: 5'- aGCUGCGAgaGCg-CGGACUGGc-GCCc -3' miRNA: 3'- aCGACGCUg-CGgaGCUUGACCuuCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 20657 | 0.69 | 0.444473 |
Target: 5'- gGCUcGCGuCGCgUCGGaguuGCUGGAgcGGCUg -3' miRNA: 3'- aCGA-CGCuGCGgAGCU----UGACCU--UCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 41753 | 0.7 | 0.415539 |
Target: 5'- cUGCUcgGACGCC-CGGccagcCUGGAAGCCc -3' miRNA: 3'- -ACGAcgCUGCGGaGCUu----GACCUUCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 12146 | 0.7 | 0.425056 |
Target: 5'- gGCUGUGGgaaguCGCUgCGAGuCUGGAguGGCCg -3' miRNA: 3'- aCGACGCU-----GCGGaGCUU-GACCU--UCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 10746 | 0.7 | 0.434702 |
Target: 5'- uUGCUGUccggccacacgGGCGCCggGAagacGCUGGggGCa -3' miRNA: 3'- -ACGACG-----------CUGCGGagCU----UGACCuuCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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