Results 81 - 85 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11520 | 5' | -55.8 | NC_003085.1 | + | 46843 | 0.75 | 0.200913 |
Target: 5'- aGUUGCGACGCCagCGu-CUGGGccuuGGCCu -3' miRNA: 3'- aCGACGCUGCGGa-GCuuGACCU----UCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 24964 | 0.75 | 0.200913 |
Target: 5'- gGCgaugagGCGGC-CCUgGAACUGGgcGCCg -3' miRNA: 3'- aCGa-----CGCUGcGGAgCUUGACCuuCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 40869 | 0.75 | 0.190369 |
Target: 5'- cGC-GCGugGCCUUGGGCgccgGGguGCCg -3' miRNA: 3'- aCGaCGCugCGGAGCUUGa---CCuuCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 22189 | 0.8 | 0.100263 |
Target: 5'- cUGCUGCGGCGCCgggCucuGCUGGGcGGCCu -3' miRNA: 3'- -ACGACGCUGCGGa--Gcu-UGACCU-UCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 3911 | 1.13 | 0.000415 |
Target: 5'- gUGCUGCGACGCCUCGAACUGGAAGCCg -3' miRNA: 3'- -ACGACGCUGCGGAGCUUGACCUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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