Results 61 - 80 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11520 | 5' | -55.8 | NC_003085.1 | + | 42007 | 0.67 | 0.591821 |
Target: 5'- cUGCcccgGCGGCGUCggcaCGGACgaGGgcGCCu -3' miRNA: 3'- -ACGa---CGCUGCGGa---GCUUGa-CCuuCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 20760 | 0.67 | 0.591821 |
Target: 5'- cUGCUGCccgGCUUCGGGCUGu--GCCg -3' miRNA: 3'- -ACGACGcugCGGAGCUUGACcuuCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 20346 | 0.67 | 0.580827 |
Target: 5'- gGCcaCGGCGCCUC-AGCgcgGGAgcGGCCg -3' miRNA: 3'- aCGacGCUGCGGAGcUUGa--CCU--UCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 39509 | 0.67 | 0.580827 |
Target: 5'- aGCcgGUG-CGCCUCGucGCUGGcaucguccuGGCCg -3' miRNA: 3'- aCGa-CGCuGCGGAGCu-UGACCu--------UCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 41078 | 0.67 | 0.57973 |
Target: 5'- gGCUGCcgaugagcgagcgGACuGCCUaccUGGACUGGGuggaGGCCc -3' miRNA: 3'- aCGACG-------------CUG-CGGA---GCUUGACCU----UCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 26113 | 0.67 | 0.601746 |
Target: 5'- gGCUGCcuccaucaucaacGACGCggccguggaaCUCGGGCUGcuGGCCa -3' miRNA: 3'- aCGACG-------------CUGCG----------GAGCUUGACcuUCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 22903 | 0.67 | 0.613904 |
Target: 5'- cGCUGcCGACGUggcaaUCGGAgUcGggGCCg -3' miRNA: 3'- aCGAC-GCUGCGg----AGCUUgAcCuuCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 18033 | 0.67 | 0.613904 |
Target: 5'- cGCUGcCGGCGCUUC-AGgUGGccccagcaGAGCCc -3' miRNA: 3'- aCGAC-GCUGCGGAGcUUgACC--------UUCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 33013 | 0.66 | 0.647123 |
Target: 5'- gGCagGCG-CGCCUguUGAGCcGGucGCCg -3' miRNA: 3'- aCGa-CGCuGCGGA--GCUUGaCCuuCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 21486 | 0.66 | 0.624974 |
Target: 5'- -uCUGCG-CgGCCUCGGACagcaGGcGGCCg -3' miRNA: 3'- acGACGCuG-CGGAGCUUGa---CCuUCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 39499 | 0.66 | 0.63605 |
Target: 5'- aUGgUGCGGgaauCGCCUgCaGGCUGGAuacgAGCCu -3' miRNA: 3'- -ACgACGCU----GCGGA-GcUUGACCU----UCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 48511 | 0.66 | 0.647123 |
Target: 5'- aUGCUcGCGGCcucGCCguccaugCGGA--GGAAGCCa -3' miRNA: 3'- -ACGA-CGCUG---CGGa------GCUUgaCCUUCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 37071 | 0.66 | 0.63605 |
Target: 5'- cGCUGgGGCGCCagcagUGcccuGCUGGAGucgaagcggcGCCa -3' miRNA: 3'- aCGACgCUGCGGa----GCu---UGACCUU----------CGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 28364 | 0.66 | 0.647123 |
Target: 5'- cUGCUGCGAgGCCUgGuACUc---GCCg -3' miRNA: 3'- -ACGACGCUgCGGAgCuUGAccuuCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 7385 | 0.66 | 0.658182 |
Target: 5'- gGCcGaCGGCGCCcgcgUGAACUGGcacGAGUCc -3' miRNA: 3'- aCGaC-GCUGCGGa---GCUUGACC---UUCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 10491 | 0.66 | 0.658182 |
Target: 5'- cUGCUGCGcgGCGCaCUgGAGaauccgcGGAAGCg -3' miRNA: 3'- -ACGACGC--UGCG-GAgCUUga-----CCUUCGg -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 3220 | 0.66 | 0.647123 |
Target: 5'- cGCaagGCGAUGCCggCGcuacCUGGGccGGCCc -3' miRNA: 3'- aCGa--CGCUGCGGa-GCuu--GACCU--UCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 47613 | 0.66 | 0.647123 |
Target: 5'- cGCUGCGcauCGCUcgCGGGCUcgucggucccGGuGGCCg -3' miRNA: 3'- aCGACGCu--GCGGa-GCUUGA----------CCuUCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 41408 | 0.66 | 0.658182 |
Target: 5'- gUGUUGuCGGaGCCUCGGGC-GGcaacAGCCa -3' miRNA: 3'- -ACGAC-GCUgCGGAGCUUGaCCu---UCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 15760 | 0.66 | 0.673621 |
Target: 5'- cGCUGCaaucGAgGCgUUUGAGCgcgucaacgcguuucUGGAGGCCa -3' miRNA: 3'- aCGACG----CUgCG-GAGCUUG---------------ACCUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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