miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11520 5' -55.8 NC_003085.1 + 24964 0.75 0.200913
Target:  5'- gGCgaugagGCGGC-CCUgGAACUGGgcGCCg -3'
miRNA:   3'- aCGa-----CGCUGcGGAgCUUGACCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 25828 0.68 0.495076
Target:  5'- uUGCccGCGAggaaUGCCUCGuACUGGcggcgauaGAGCCc -3'
miRNA:   3'- -ACGa-CGCU----GCGGAGCuUGACC--------UUCGG- -5'
11520 5' -55.8 NC_003085.1 + 26113 0.67 0.601746
Target:  5'- gGCUGCcuccaucaucaacGACGCggccguggaaCUCGGGCUGcuGGCCa -3'
miRNA:   3'- aCGACG-------------CUGCG----------GAGCUUGACcuUCGG- -5'
11520 5' -55.8 NC_003085.1 + 27718 0.72 0.319985
Target:  5'- cGCUGUcGCGCCUCGuuGCUGGcgAGGUg -3'
miRNA:   3'- aCGACGcUGCGGAGCu-UGACC--UUCGg -5'
11520 5' -55.8 NC_003085.1 + 28364 0.66 0.647123
Target:  5'- cUGCUGCGAgGCCUgGuACUc---GCCg -3'
miRNA:   3'- -ACGACGCUgCGGAgCuUGAccuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 28627 0.72 0.296953
Target:  5'- cUGCUGCGGCcgGCCuuUCGAuaccccuucCUGGAGGCg -3'
miRNA:   3'- -ACGACGCUG--CGG--AGCUu--------GACCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 28959 0.7 0.400587
Target:  5'- cUGCUGaGACGCCUgCGAcuGCUgcucggcagcgccgcGGAAGUCg -3'
miRNA:   3'- -ACGACgCUGCGGA-GCU--UGA---------------CCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 29344 0.68 0.548136
Target:  5'- cGUUGCGcUGCUggccgaauUCGGACUGGGcguugcgguaGGCCu -3'
miRNA:   3'- aCGACGCuGCGG--------AGCUUGACCU----------UCGG- -5'
11520 5' -55.8 NC_003085.1 + 30226 0.67 0.60285
Target:  5'- gGCggggGUGACGuCCUgcgUGGGCUGcuGggGCCg -3'
miRNA:   3'- aCGa---CGCUGC-GGA---GCUUGAC--CuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 30331 0.68 0.537363
Target:  5'- cGcCUGgGGCGgCggGGGCUGGgcGCCg -3'
miRNA:   3'- aC-GACgCUGCgGagCUUGACCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 30489 0.66 0.63605
Target:  5'- ---cGCGACGCCU-GGACUcGAcgacAGCCa -3'
miRNA:   3'- acgaCGCUGCGGAgCUUGAcCU----UCGG- -5'
11520 5' -55.8 NC_003085.1 + 30662 0.73 0.27523
Target:  5'- cGCUGCGgcagggcgcucuGCGCCUCGcAUUGGcuGCUg -3'
miRNA:   3'- aCGACGC------------UGCGGAGCuUGACCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 31971 0.69 0.464377
Target:  5'- gGCUgGCGAcugcccccguuaCGCCUgGGGCUGGcgcuGCCu -3'
miRNA:   3'- aCGA-CGCU------------GCGGAgCUUGACCuu--CGG- -5'
11520 5' -55.8 NC_003085.1 + 32726 0.7 0.415539
Target:  5'- cGUaGCGcccauauuGCGCCUUGucCUGGAGGCUg -3'
miRNA:   3'- aCGaCGC--------UGCGGAGCuuGACCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 33013 0.66 0.647123
Target:  5'- gGCagGCG-CGCCUguUGAGCcGGucGCCg -3'
miRNA:   3'- aCGa-CGCuGCGGA--GCUUGaCCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 34951 0.71 0.369978
Target:  5'- uUGCUGgccggcggaGGCGCCUC--ACaGGAAGCCg -3'
miRNA:   3'- -ACGACg--------CUGCGGAGcuUGaCCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 35463 0.69 0.451385
Target:  5'- gGCUGCGcagaGCC-CGAugugaacgaacucaACUGGAGGUCc -3'
miRNA:   3'- aCGACGCug--CGGaGCU--------------UGACCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 36446 0.68 0.548136
Target:  5'- gUGCggaggGCGGCGCCUCauGGcgagguagugccACUGGcGGCUu -3'
miRNA:   3'- -ACGa----CGCUGCGGAG--CU------------UGACCuUCGG- -5'
11520 5' -55.8 NC_003085.1 + 37071 0.66 0.63605
Target:  5'- cGCUGgGGCGCCagcagUGcccuGCUGGAGucgaagcggcGCCa -3'
miRNA:   3'- aCGACgCUGCGGa----GCu---UGACCUU----------CGG- -5'
11520 5' -55.8 NC_003085.1 + 37318 0.72 0.336069
Target:  5'- gGuCUGCGACGCCUgccuugagcgCGGcgGCUGGGccGCCa -3'
miRNA:   3'- aC-GACGCUGCGGA----------GCU--UGACCUu-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.