miRNA display CGI


Results 61 - 80 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11520 5' -55.8 NC_003085.1 + 39071 0.68 0.537363
Target:  5'- ---cGCGACGUagcgggCUCGAAuCUGcGggGCCg -3'
miRNA:   3'- acgaCGCUGCG------GAGCUU-GAC-CuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 39499 0.66 0.63605
Target:  5'- aUGgUGCGGgaauCGCCUgCaGGCUGGAuacgAGCCu -3'
miRNA:   3'- -ACgACGCU----GCGGA-GcUUGACCU----UCGG- -5'
11520 5' -55.8 NC_003085.1 + 39509 0.67 0.580827
Target:  5'- aGCcgGUG-CGCCUCGucGCUGGcaucguccuGGCCg -3'
miRNA:   3'- aCGa-CGCuGCGGAGCu-UGACCu--------UCGG- -5'
11520 5' -55.8 NC_003085.1 + 40369 0.67 0.60285
Target:  5'- cUGCUGCccgcggcgcuGACGCCUCuGGCgcu-GGCCg -3'
miRNA:   3'- -ACGACG----------CUGCGGAGcUUGaccuUCGG- -5'
11520 5' -55.8 NC_003085.1 + 40487 0.71 0.34433
Target:  5'- cGCUGCuggcgGGCGUCgUCGAGCcGG-AGCCg -3'
miRNA:   3'- aCGACG-----CUGCGG-AGCUUGaCCuUCGG- -5'
11520 5' -55.8 NC_003085.1 + 40869 0.75 0.190369
Target:  5'- cGC-GCGugGCCUUGGGCgccgGGguGCCg -3'
miRNA:   3'- aCGaCGCugCGGAGCUUGa---CCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 41078 0.67 0.57973
Target:  5'- gGCUGCcgaugagcgagcgGACuGCCUaccUGGACUGGGuggaGGCCc -3'
miRNA:   3'- aCGACG-------------CUG-CGGA---GCUUGACCU----UCGG- -5'
11520 5' -55.8 NC_003085.1 + 41088 0.69 0.464377
Target:  5'- cGCcaGCGACGCCcacggCGAugacgacgccGCUGGGccAGCCc -3'
miRNA:   3'- aCGa-CGCUGCGGa----GCU----------UGACCU--UCGG- -5'
11520 5' -55.8 NC_003085.1 + 41408 0.66 0.658182
Target:  5'- gUGUUGuCGGaGCCUCGGGC-GGcaacAGCCa -3'
miRNA:   3'- -ACGAC-GCUgCGGAGCUUGaCCu---UCGG- -5'
11520 5' -55.8 NC_003085.1 + 41753 0.7 0.415539
Target:  5'- cUGCUcgGACGCC-CGGccagcCUGGAAGCCc -3'
miRNA:   3'- -ACGAcgCUGCGGaGCUu----GACCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 41887 0.7 0.425056
Target:  5'- cGCUuggGCGGCGCCgacaugcgCGAgccuguGCUGGggGgCg -3'
miRNA:   3'- aCGA---CGCUGCGGa-------GCU------UGACCuuCgG- -5'
11520 5' -55.8 NC_003085.1 + 42007 0.67 0.591821
Target:  5'- cUGCcccgGCGGCGUCggcaCGGACgaGGgcGCCu -3'
miRNA:   3'- -ACGa---CGCUGCGGa---GCUUGa-CCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 43272 0.67 0.60948
Target:  5'- cGCUGCacgagGACGCCgcgaaguaccgcgCGGcgguggagcgACUGGAgcaGGCCg -3'
miRNA:   3'- aCGACG-----CUGCGGa------------GCU----------UGACCU---UCGG- -5'
11520 5' -55.8 NC_003085.1 + 43732 0.67 0.591821
Target:  5'- cGCUGCaacccCGCCcccCGGgcuGCUGGAGGCg -3'
miRNA:   3'- aCGACGcu---GCGGa--GCU---UGACCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 44213 0.68 0.526663
Target:  5'- aGC-GCGugGCCac--GCUGGAGGCg -3'
miRNA:   3'- aCGaCGCugCGGagcuUGACCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 44253 0.68 0.516045
Target:  5'- gGCcGCGuCGCgCUCGGACUcGGccuGCCu -3'
miRNA:   3'- aCGaCGCuGCG-GAGCUUGA-CCuu-CGG- -5'
11520 5' -55.8 NC_003085.1 + 45744 0.69 0.474503
Target:  5'- gGCUGacgGACGCCgaagcggCGAcgguGCUGGGccucacAGCCa -3'
miRNA:   3'- aCGACg--CUGCGGa------GCU----UGACCU------UCGG- -5'
11520 5' -55.8 NC_003085.1 + 46731 0.68 0.541664
Target:  5'- gGCgGCGaaGCGCCUCGGcaucACUGGcAacacgucugcccggcAGCCg -3'
miRNA:   3'- aCGaCGC--UGCGGAGCU----UGACC-U---------------UCGG- -5'
11520 5' -55.8 NC_003085.1 + 46843 0.75 0.200913
Target:  5'- aGUUGCGACGCCagCGu-CUGGGccuuGGCCu -3'
miRNA:   3'- aCGACGCUGCGGa-GCuuGACCU----UCGG- -5'
11520 5' -55.8 NC_003085.1 + 47326 0.67 0.580827
Target:  5'- gGCggacgGUGACGCCU-GAGCacaacgccauggUGGAuGCCa -3'
miRNA:   3'- aCGa----CGCUGCGGAgCUUG------------ACCUuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.