Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11520 | 5' | -55.8 | NC_003085.1 | + | 40487 | 0.71 | 0.34433 |
Target: 5'- cGCUGCuggcgGGCGUCgUCGAGCcGG-AGCCg -3' miRNA: 3'- aCGACG-----CUGCGG-AGCUUGaCCuUCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 40369 | 0.67 | 0.60285 |
Target: 5'- cUGCUGCccgcggcgcuGACGCCUCuGGCgcu-GGCCg -3' miRNA: 3'- -ACGACG----------CUGCGGAGcUUGaccuUCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 39509 | 0.67 | 0.580827 |
Target: 5'- aGCcgGUG-CGCCUCGucGCUGGcaucguccuGGCCg -3' miRNA: 3'- aCGa-CGCuGCGGAGCu-UGACCu--------UCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 39499 | 0.66 | 0.63605 |
Target: 5'- aUGgUGCGGgaauCGCCUgCaGGCUGGAuacgAGCCu -3' miRNA: 3'- -ACgACGCU----GCGGA-GcUUGACCU----UCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 39071 | 0.68 | 0.537363 |
Target: 5'- ---cGCGACGUagcgggCUCGAAuCUGcGggGCCg -3' miRNA: 3'- acgaCGCUGCG------GAGCUU-GAC-CuuCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 37318 | 0.72 | 0.336069 |
Target: 5'- gGuCUGCGACGCCUgccuugagcgCGGcgGCUGGGccGCCa -3' miRNA: 3'- aC-GACGCUGCGGA----------GCU--UGACCUu-CGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 37071 | 0.66 | 0.63605 |
Target: 5'- cGCUGgGGCGCCagcagUGcccuGCUGGAGucgaagcggcGCCa -3' miRNA: 3'- aCGACgCUGCGGa----GCu---UGACCUU----------CGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 36446 | 0.68 | 0.548136 |
Target: 5'- gUGCggaggGCGGCGCCUCauGGcgagguagugccACUGGcGGCUu -3' miRNA: 3'- -ACGa----CGCUGCGGAG--CU------------UGACCuUCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 35463 | 0.69 | 0.451385 |
Target: 5'- gGCUGCGcagaGCC-CGAugugaacgaacucaACUGGAGGUCc -3' miRNA: 3'- aCGACGCug--CGGaGCU--------------UGACCUUCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 34951 | 0.71 | 0.369978 |
Target: 5'- uUGCUGgccggcggaGGCGCCUC--ACaGGAAGCCg -3' miRNA: 3'- -ACGACg--------CUGCGGAGcuUGaCCUUCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 33013 | 0.66 | 0.647123 |
Target: 5'- gGCagGCG-CGCCUguUGAGCcGGucGCCg -3' miRNA: 3'- aCGa-CGCuGCGGA--GCUUGaCCuuCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 32726 | 0.7 | 0.415539 |
Target: 5'- cGUaGCGcccauauuGCGCCUUGucCUGGAGGCUg -3' miRNA: 3'- aCGaCGC--------UGCGGAGCuuGACCUUCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 31971 | 0.69 | 0.464377 |
Target: 5'- gGCUgGCGAcugcccccguuaCGCCUgGGGCUGGcgcuGCCu -3' miRNA: 3'- aCGA-CGCU------------GCGGAgCUUGACCuu--CGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 30662 | 0.73 | 0.27523 |
Target: 5'- cGCUGCGgcagggcgcucuGCGCCUCGcAUUGGcuGCUg -3' miRNA: 3'- aCGACGC------------UGCGGAGCuUGACCuuCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 30489 | 0.66 | 0.63605 |
Target: 5'- ---cGCGACGCCU-GGACUcGAcgacAGCCa -3' miRNA: 3'- acgaCGCUGCGGAgCUUGAcCU----UCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 30331 | 0.68 | 0.537363 |
Target: 5'- cGcCUGgGGCGgCggGGGCUGGgcGCCg -3' miRNA: 3'- aC-GACgCUGCgGagCUUGACCuuCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 30226 | 0.67 | 0.60285 |
Target: 5'- gGCggggGUGACGuCCUgcgUGGGCUGcuGggGCCg -3' miRNA: 3'- aCGa---CGCUGC-GGA---GCUUGAC--CuuCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 29344 | 0.68 | 0.548136 |
Target: 5'- cGUUGCGcUGCUggccgaauUCGGACUGGGcguugcgguaGGCCu -3' miRNA: 3'- aCGACGCuGCGG--------AGCUUGACCU----------UCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 28959 | 0.7 | 0.400587 |
Target: 5'- cUGCUGaGACGCCUgCGAcuGCUgcucggcagcgccgcGGAAGUCg -3' miRNA: 3'- -ACGACgCUGCGGA-GCU--UGA---------------CCUUCGG- -5' |
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11520 | 5' | -55.8 | NC_003085.1 | + | 28627 | 0.72 | 0.296953 |
Target: 5'- cUGCUGCGGCcgGCCuuUCGAuaccccuucCUGGAGGCg -3' miRNA: 3'- -ACGACGCUG--CGG--AGCUu--------GACCUUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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