miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11520 5' -55.8 NC_003085.1 + 28364 0.66 0.647123
Target:  5'- cUGCUGCGAgGCCUgGuACUc---GCCg -3'
miRNA:   3'- -ACGACGCUgCGGAgCuUGAccuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 27718 0.72 0.319985
Target:  5'- cGCUGUcGCGCCUCGuuGCUGGcgAGGUg -3'
miRNA:   3'- aCGACGcUGCGGAGCu-UGACC--UUCGg -5'
11520 5' -55.8 NC_003085.1 + 26113 0.67 0.601746
Target:  5'- gGCUGCcuccaucaucaacGACGCggccguggaaCUCGGGCUGcuGGCCa -3'
miRNA:   3'- aCGACG-------------CUGCG----------GAGCUUGACcuUCGG- -5'
11520 5' -55.8 NC_003085.1 + 25828 0.68 0.495076
Target:  5'- uUGCccGCGAggaaUGCCUCGuACUGGcggcgauaGAGCCc -3'
miRNA:   3'- -ACGa-CGCU----GCGGAGCuUGACC--------UUCGG- -5'
11520 5' -55.8 NC_003085.1 + 24964 0.75 0.200913
Target:  5'- gGCgaugagGCGGC-CCUgGAACUGGgcGCCg -3'
miRNA:   3'- aCGa-----CGCUGcGGAgCUUGACCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 24626 0.66 0.658182
Target:  5'- gUGCUGCaGCGCUUCaccucGGCggaGGAGGCg -3'
miRNA:   3'- -ACGACGcUGCGGAGc----UUGa--CCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 23550 0.71 0.361285
Target:  5'- cUGCUGaCGaAUGCCUCGAcGCUGcGcuGGGCCu -3'
miRNA:   3'- -ACGAC-GC-UGCGGAGCU-UGAC-C--UUCGG- -5'
11520 5' -55.8 NC_003085.1 + 23431 0.67 0.591821
Target:  5'- gUGCUGgGgcuGCGCCUCGGcgGCcGGcGGCg -3'
miRNA:   3'- -ACGACgC---UGCGGAGCU--UGaCCuUCGg -5'
11520 5' -55.8 NC_003085.1 + 23182 0.73 0.268276
Target:  5'- gUGCUGCGcCGCCUCGcuCaGGAcAGUCu -3'
miRNA:   3'- -ACGACGCuGCGGAGCuuGaCCU-UCGG- -5'
11520 5' -55.8 NC_003085.1 + 22903 0.67 0.613904
Target:  5'- cGCUGcCGACGUggcaaUCGGAgUcGggGCCg -3'
miRNA:   3'- aCGAC-GCUGCGg----AGCUUgAcCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 22189 0.8 0.100263
Target:  5'- cUGCUGCGGCGCCgggCucuGCUGGGcGGCCu -3'
miRNA:   3'- -ACGACGCUGCGGa--Gcu-UGACCU-UCGG- -5'
11520 5' -55.8 NC_003085.1 + 21488 0.67 0.569876
Target:  5'- cUGC-GCGGCGUggUGGACUGGuuccccuugGAGCCc -3'
miRNA:   3'- -ACGaCGCUGCGgaGCUUGACC---------UUCGG- -5'
11520 5' -55.8 NC_003085.1 + 21486 0.66 0.624974
Target:  5'- -uCUGCG-CgGCCUCGGACagcaGGcGGCCg -3'
miRNA:   3'- acGACGCuG-CGGAGCUUGa---CCuUCGG- -5'
11520 5' -55.8 NC_003085.1 + 20760 0.67 0.591821
Target:  5'- cUGCUGCccgGCUUCGGGCUGu--GCCg -3'
miRNA:   3'- -ACGACGcugCGGAGCUUGACcuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 20657 0.69 0.444473
Target:  5'- gGCUcGCGuCGCgUCGGaguuGCUGGAgcGGCUg -3'
miRNA:   3'- aCGA-CGCuGCGgAGCU----UGACCU--UCGG- -5'
11520 5' -55.8 NC_003085.1 + 20346 0.67 0.580827
Target:  5'- gGCcaCGGCGCCUC-AGCgcgGGAgcGGCCg -3'
miRNA:   3'- aCGacGCUGCGGAGcUUGa--CCU--UCGG- -5'
11520 5' -55.8 NC_003085.1 + 20198 0.71 0.352735
Target:  5'- aGCUGCGcaGCGCCUCuaGGCcGGAcuccAGCCc -3'
miRNA:   3'- aCGACGC--UGCGGAGc-UUGaCCU----UCGG- -5'
11520 5' -55.8 NC_003085.1 + 20092 0.7 0.434702
Target:  5'- cGCUGUGACguGCCgcagguggCgGGGCUGGAguccGGCCu -3'
miRNA:   3'- aCGACGCUG--CGGa-------G-CUUGACCU----UCGG- -5'
11520 5' -55.8 NC_003085.1 + 19950 0.67 0.60285
Target:  5'- cGCUGgUGACGgCUCcucaguGCUGGAgcaguuccuGGCCa -3'
miRNA:   3'- aCGAC-GCUGCgGAGcu----UGACCU---------UCGG- -5'
11520 5' -55.8 NC_003085.1 + 18565 0.67 0.569876
Target:  5'- aUGCUG-GcCGCCUUGAggAC-GGggGCUg -3'
miRNA:   3'- -ACGACgCuGCGGAGCU--UGaCCuuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.