Results 81 - 85 of 85 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11520 | 5' | -55.8 | NC_003085.1 | + | 18565 | 0.67 | 0.569876 |
Target: 5'- aUGCUG-GcCGCCUUGAggAC-GGggGCUg -3' miRNA: 3'- -ACGACgCuGCGGAGCU--UGaCCuuCGG- -5' |
|||||||
11520 | 5' | -55.8 | NC_003085.1 | + | 29344 | 0.68 | 0.548136 |
Target: 5'- cGUUGCGcUGCUggccgaauUCGGACUGGGcguugcgguaGGCCu -3' miRNA: 3'- aCGACGCuGCGG--------AGCUUGACCU----------UCGG- -5' |
|||||||
11520 | 5' | -55.8 | NC_003085.1 | + | 16521 | 0.68 | 0.548136 |
Target: 5'- -aCUGcCGuCGCCUCGAAugacgucggcgcCUGGAuauggGGCCa -3' miRNA: 3'- acGAC-GCuGCGGAGCUU------------GACCU-----UCGG- -5' |
|||||||
11520 | 5' | -55.8 | NC_003085.1 | + | 46731 | 0.68 | 0.541664 |
Target: 5'- gGCgGCGaaGCGCCUCGGcaucACUGGcAacacgucugcccggcAGCCg -3' miRNA: 3'- aCGaCGC--UGCGGAGCU----UGACC-U---------------UCGG- -5' |
|||||||
11520 | 5' | -55.8 | NC_003085.1 | + | 33013 | 0.66 | 0.647123 |
Target: 5'- gGCagGCG-CGCCUguUGAGCcGGucGCCg -3' miRNA: 3'- aCGa-CGCuGCGGA--GCUUGaCCuuCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home