miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11520 5' -55.8 NC_003085.1 + 18565 0.67 0.569876
Target:  5'- aUGCUG-GcCGCCUUGAggAC-GGggGCUg -3'
miRNA:   3'- -ACGACgCuGCGGAGCU--UGaCCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 48511 0.66 0.647123
Target:  5'- aUGCUcGCGGCcucGCCguccaugCGGA--GGAAGCCa -3'
miRNA:   3'- -ACGA-CGCUG---CGGa------GCUUgaCCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 37318 0.72 0.336069
Target:  5'- gGuCUGCGACGCCUgccuugagcgCGGcgGCUGGGccGCCa -3'
miRNA:   3'- aC-GACGCUGCGGA----------GCU--UGACCUu-CGG- -5'
11520 5' -55.8 NC_003085.1 + 3763 0.7 0.434702
Target:  5'- cGCUGCGugGCCgcaucccaaCGcAACUcGAGGUCa -3'
miRNA:   3'- aCGACGCugCGGa--------GC-UUGAcCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 46731 0.68 0.541664
Target:  5'- gGCgGCGaaGCGCCUCGGcaucACUGGcAacacgucugcccggcAGCCg -3'
miRNA:   3'- aCGaCGC--UGCGGAGCU----UGACC-U---------------UCGG- -5'
11520 5' -55.8 NC_003085.1 + 28364 0.66 0.647123
Target:  5'- cUGCUGCGAgGCCUgGuACUc---GCCg -3'
miRNA:   3'- -ACGACGCUgCGGAgCuUGAccuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 2719 0.69 0.444473
Target:  5'- ---cGUGACGCCaccaCGGcccaagcggguaGCUGGGAGCCa -3'
miRNA:   3'- acgaCGCUGCGGa---GCU------------UGACCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 47613 0.66 0.647123
Target:  5'- cGCUGCGcauCGCUcgCGGGCUcgucggucccGGuGGCCg -3'
miRNA:   3'- aCGACGCu--GCGGa-GCUUGA----------CCuUCGG- -5'
11520 5' -55.8 NC_003085.1 + 33013 0.66 0.647123
Target:  5'- gGCagGCG-CGCCUguUGAGCcGGucGCCg -3'
miRNA:   3'- aCGa-CGCuGCGGA--GCUUGaCCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 30226 0.67 0.60285
Target:  5'- gGCggggGUGACGuCCUgcgUGGGCUGcuGggGCCg -3'
miRNA:   3'- aCGa---CGCUGC-GGA---GCUUGAC--CuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 39071 0.68 0.537363
Target:  5'- ---cGCGACGUagcgggCUCGAAuCUGcGggGCCg -3'
miRNA:   3'- acgaCGCUGCG------GAGCUU-GAC-CuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 22189 0.8 0.100263
Target:  5'- cUGCUGCGGCGCCgggCucuGCUGGGcGGCCu -3'
miRNA:   3'- -ACGACGCUGCGGa--Gcu-UGACCU-UCGG- -5'
11520 5' -55.8 NC_003085.1 + 41088 0.69 0.464377
Target:  5'- cGCcaGCGACGCCcacggCGAugacgacgccGCUGGGccAGCCc -3'
miRNA:   3'- aCGa-CGCUGCGGa----GCU----------UGACCU--UCGG- -5'
11520 5' -55.8 NC_003085.1 + 8575 0.7 0.434702
Target:  5'- cGCUGguGCGCgUCGuACUGGcGGGCCa -3'
miRNA:   3'- aCGACgcUGCGgAGCuUGACC-UUCGG- -5'
11520 5' -55.8 NC_003085.1 + 28959 0.7 0.400587
Target:  5'- cUGCUGaGACGCCUgCGAcuGCUgcucggcagcgccgcGGAAGUCg -3'
miRNA:   3'- -ACGACgCUGCGGA-GCU--UGA---------------CCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 23182 0.73 0.268276
Target:  5'- gUGCUGCGcCGCCUCGcuCaGGAcAGUCu -3'
miRNA:   3'- -ACGACGCuGCGGAGCuuGaCCU-UCGG- -5'
11520 5' -55.8 NC_003085.1 + 43732 0.67 0.591821
Target:  5'- cGCUGCaacccCGCCcccCGGgcuGCUGGAGGCg -3'
miRNA:   3'- aCGACGcu---GCGGa--GCU---UGACCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 39499 0.66 0.63605
Target:  5'- aUGgUGCGGgaauCGCCUgCaGGCUGGAuacgAGCCu -3'
miRNA:   3'- -ACgACGCU----GCGGA-GcUUGACCU----UCGG- -5'
11520 5' -55.8 NC_003085.1 + 18033 0.67 0.613904
Target:  5'- cGCUGcCGGCGCUUC-AGgUGGccccagcaGAGCCc -3'
miRNA:   3'- aCGAC-GCUGCGGAGcUUgACC--------UUCGG- -5'
11520 5' -55.8 NC_003085.1 + 39509 0.67 0.580827
Target:  5'- aGCcgGUG-CGCCUCGucGCUGGcaucguccuGGCCg -3'
miRNA:   3'- aCGa-CGCuGCGGAGCu-UGACCu--------UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.